DRSC/TRiP Functional Genomics Resources

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Protein Alignment lt and VPS41

DIOPT Version :9

Sequence 1:NP_001036415.2 Gene:lt / 3355130 FlyBaseID:FBgn0002566 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_010365.3 Gene:VPS41 / 851653 SGDID:S000002487 Length:992 Species:Saccharomyces cerevisiae


Alignment Length:923 Identity:202/923 - (21%)
Similarity:373/923 - (40%) Gaps:211/923 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 NEEDVEPKFKYHRLANDLKYMLNADVITCSAVHLKFLIFGTFRGRVCIFDHQGNSVYSNLSASER 82
            ::||..|..||.|::...|.....|.|:.......|..|||..|.:    |.....:..:...:.
Yeast    93 DDEDEPPLLKYTRISQLPKNFFQRDSISSCLFGDTFFAFGTHSGIL----HLTTCAFEPIKTIKC 153

  Fly    83 HTHQVAVNNIDVDHKGEYVATCSDDGKVNITGLFSSDNNHSLSFGKFIKVVSLEPDSKAHIKRFV 147
            |...:...|.|    |:|.||.|.||.|.|..:....|.....|.:.|..|:|..:.:|. :.||
Yeast   154 HRSSILCINTD----GKYFATGSIDGTVIIGSMDDPQNITQYDFKRPINSVALHSNFQAS-RMFV 213

  Fly   148 VGD--DKLILYERNLL-------------KKLKPVELCS-VEGSVLSICWHGNFIAWASHIGVRV 196
            .|.  ..::|.:||.|             ||.:..:|.| ::|.::.|...|:.|.|....|:..
Yeast   214 SGGMAGDVVLSQRNWLGNRIDIVLNKKKKKKTRKDDLSSDMKGPIMGIYTMGDLILWMDDDGITF 278

  Fly   197 YDLNERCSLGLIKWEVPPQERLEN--------FRCHLRWSNKHTLLIGWVDTI---RVCVIRKRN 250
            .|:..|..|    ..:|...|:.|        ||.|:.:.....::|||...|   :|...:..|
Yeast   279 CDVPTRSQL----LNIPFPSRIFNVQDVRPDLFRPHVHFLESDRVVIGWGSNIWLFKVSFTKDSN 339

  Fly   251 SIEAS--------------TGNLPVYIVDPISTFQTT--------------FYVCGLAPLSAKQL 287
            ||::.              |.|:...:....|:|:.|              ..:.|||.....||
Yeast   340 SIKSGDSNSQSNNMSHFNPTTNIGSLLSSAASSFRGTPDKKVELECHFTVSMLITGLASFKDDQL 404

  Fly   288 VVLGF---------------------RKEKSSCFKALRPVLCVIEYKMNNSEEICTDSLTLRGFE 331
            :.|||                     ::.::...|...|.|.:::  :.|.:||..|.:.::.:|
Yeast   405 LCLGFDIDIEEEATIDEDMKEGKNFSKRPENLLAKGNAPELKIVD--LFNGDEIYNDEVIMKNYE 467

  Fly   332 EYTVNDYSLGGIIEEN--RFYIVAPKDIVVASLIETDDRIEWLIKHSKFEEAMELISANGGNVPV 394
            :.::|||.||..|::.  .:|:::..|.:....:...|..:|.::..::.:|.::.....|:...
Yeast   468 KLSINDYHLGKHIDKTTPEYYLISSNDAIRVQELSLKDHFDWFMERKQYYKAWKIGKYVIGSEER 532

  Fly   395 LSVAKLYINHLLALKKYD---DAAKLCLRMLGN----------DKVL--WEEEVFKFVKCQQLRS 444
            .|:...::|.|:..|.:.   |...:......|          ..||  |.:.:...:....:..
Yeast   533 FSIGLKFLNSLVTKKDWGTLVDHLNIIFEETLNSLDSNSYDVTQNVLKEWADIIEILITSGNIVE 597

  Fly   445 VSAYLPTSDECKLDPHVYEMVLYEFLKFDVCG-FLNLIKEWPSHLYDGLAVINAIHDNFRKH--- 505
            ::..:|...  .|...||:.||:.||..|:.. |...|.:|...|:       ::.| |.:.   
Yeast   598 IAPLIPKKP--ALRKSVYDDVLHYFLANDMINKFHEYITKWDLKLF-------SVED-FEEELET 652

  Fly   506 --------------------YANQLLESLALLYSYQGDFESALRMYLKLQNKDVFQLIR------ 544
                                |..:|:.    ||..:..:..|:...||.::.....:|:      
Yeast   653 RIEAASEPTASSKEEGSNITYRTELVH----LYLKENKYTKAIPHLLKAKDLRALTIIKIQNLLP 713

  Fly   545 RY--ELYDV-----------ISKLIIPLIQLDRDCAFEILLDKKKIKTEIVVHQL-EHN-----Q 590
            :|  ::.|:           ||||.|..||...:...::|.:.:...:...:::: ||:     :
Yeast   714 QYLDQIVDIILLPYKGEISHISKLSIFEIQTIFNKPIDLLFENRHTISVARIYEIFEHDCPKSFK 778

  Fly   591 EYLYWYLDSLLKKDPS---NVFQKKLISLYAIFDRNKLLPFLKRSKDYDIQEALVICKQE-NFYP 651
            :.|:.||...|..|.|   :.::.:||.||:.:||..|||||::..:|:::.|:.:|..: ..|.
Yeast   779 KILFCYLIKFLDTDDSFMISPYENQLIELYSEYDRQSLLPFLQKHNNYNVESAIEVCSSKLGLYN 843

  Fly   652 EIVYLLGCMGGVEASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALIN------EFSK------ 704
            |::||.|.:|  |..:||::||..:::.::||:|.|...||:||..:||      .|:|      
Yeast   844 ELIYLWGKIG--ETKKALSLIIDELKNPQLAIDFVKNWGDSELWEFMINYSLDKPNFTKAILTCS 906

  Fly   705 --HPEIVTKVLDGIVDYFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYNLQGE-------ILSSAQ 760
              ..||..||:.|:.|             ...|.||:..:..:::..:|..|       |::...
Yeast   907 DETSEIYLKVIRGMSD-------------DLQIDNLQDIIKHIVQENSLSLEVRDNILVIINDET 958

  Fly   761 QIQLNDYFEIHSE 773
            :...|::.:|.|:
Yeast   959 KKFANEFLKIRSQ 971

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltNP_001036415.2 WD40 repeat 33..81 CDD:293791 9/47 (19%)
WD40 <42..204 CDD:295369 45/177 (25%)
WD40 repeat 90..123 CDD:293791 12/32 (38%)
WD40 repeat 130..168 CDD:293791 13/52 (25%)
CLH 570..707 CDD:128594 46/160 (29%)
Clathrin 580..708 CDD:279031 45/151 (30%)
VPS41NP_010365.3 WD40 145..179 CDD:197651 11/37 (30%)
CLH 753..896 CDD:128594 44/144 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157346577
Domainoid 1 1.000 90 1.000 Domainoid score I1769
eggNOG 1 0.900 - - E1_KOG2066
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 152 1.000 Inparanoid score I1109
Isobase 1 0.950 - 0.919607 Normalized mean entropy S2845
OMA 1 1.010 - - QHG54432
OrthoFinder 1 1.000 - - FOG0004492
OrthoInspector 1 1.000 - - oto99401
orthoMCL 1 0.900 - - OOG6_103391
Panther 1 1.100 - - LDO PTHR12616
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1654
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.740

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