Sequence 1: | NP_001036415.2 | Gene: | lt / 3355130 | FlyBaseID: | FBgn0002566 | Length: | 841 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_004912577.1 | Gene: | vps41 / 100489726 | XenbaseID: | XB-GENE-999710 | Length: | 888 | Species: | Xenopus tropicalis |
Alignment Length: | 834 | Identity: | 315/834 - (37%) |
---|---|---|---|
Similarity: | 487/834 - (58%) | Gaps: | 36/834 - (4%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 NEEDVEPKFKYHRLANDLKYMLNADVITCSAVHLKFLIFGTFRGRVCIFDHQGNSVYSNLSASER 82
Fly 83 HTHQVAVNNIDVDHKGEYVATCSDDGKVNITGLFSSDNNHSLSFGKFIKVVSLEPD-SKAHIKRF 146
Fly 147 VVGDDKLILYERNLLKKLKPVELCSVEGSVLSICWHGNFIAWASHIGVRVYDLNERCSLGLIKWE 211
Fly 212 VPPQE---RLENFRCHLRWSNKHTLLIGWVDTIRVCVIRKRNSIEASTGNLPVYIVDPISTFQTT 273
Fly 274 FYVCGLAPLSAKQLVVLGFRKE---KSSCFKALRPVLCVIEYKMNNSEEICTDSLTLRGFEEYTV 335
Fly 336 NDYSLGGIIEENRFYIVAPKDIVVASLIETDDRIEWLIKHSKFEEAM---ELISANGGNVPVLSV 397
Fly 398 AKLYINHLLALKKYDDAAKLCLRMLGNDKVLWEEEVFKFVKCQQLRSVSAYLPTSDECKLDPHVY 462
Fly 463 EMVLYEFLKFDVCGFLNLIKEWPSHLYDGLAVINAIHDNFRKHYANQ-LLESLALLYSYQGDFES 526
Fly 527 ALRMYLKLQNKDVFQLIRRYELYDVISKLIIPLIQLDRDCAFEILLDKK-KIKTEIVVHQLEHNQ 590
Fly 591 EYLYWYLDSLLKKD--PSNVFQKKLISLYAIFDRNKLLPFLKRSKDYDIQEALVICKQENFYPEI 653
Fly 654 VYLLGCMGGVEASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALINEFSKHPEIVTKVLDGIVD 718
Fly 719 YFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYNLQGEILSSAQQIQLNDYFEIHSEIVTTQRRGQQ 783
Fly 784 VSYEQLCSLCHRPVLMA-GTHLYCIIRLECGHVYHKPCI----QGELLKNCNEC 832 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
lt | NP_001036415.2 | WD40 repeat | 33..81 | CDD:293791 | 17/47 (36%) |
WD40 | <42..204 | CDD:295369 | 65/162 (40%) | ||
WD40 repeat | 90..123 | CDD:293791 | 16/32 (50%) | ||
WD40 repeat | 130..168 | CDD:293791 | 17/38 (45%) | ||
CLH | 570..707 | CDD:128594 | 59/139 (42%) | ||
Clathrin | 580..708 | CDD:279031 | 55/129 (43%) | ||
vps41 | XP_004912577.1 | WD40 repeat | 116..158 | CDD:293791 | 19/47 (40%) |
WD40 repeat | 162..203 | CDD:293791 | 17/40 (43%) | ||
WD40 repeat | 208..241 | CDD:293791 | 10/36 (28%) | ||
WD40 repeat | 252..298 | CDD:293791 | 15/47 (32%) | ||
CLH | 605..742 | CDD:128594 | 59/138 (43%) | ||
Vps39_2 | 747..848 | CDD:371009 | 29/100 (29%) | ||
RING-H2_Vps41 | 821..875 | CDD:319604 | 13/52 (25%) | ||
RING-H2 finger (C3H2C3-type) | 825..872 | CDD:319604 | 11/46 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 389 | 1.000 | Domainoid score | I792 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 1 | 1.000 | - | - | H69165 | |
Inparanoid | 1 | 1.050 | 546 | 1.000 | Inparanoid score | I1132 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D103854at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0004492 | |
OrthoInspector | 1 | 1.000 | - | - | oto103270 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 1 | 1.000 | - | - | X3779 | |
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
8 | 8.060 |