DRSC/TRiP Functional Genomics Resources

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Protein Alignment lt and vps41

DIOPT Version :9

Sequence 1:NP_001036415.2 Gene:lt / 3355130 FlyBaseID:FBgn0002566 Length:841 Species:Drosophila melanogaster
Sequence 2:XP_004912577.1 Gene:vps41 / 100489726 XenbaseID:XB-GENE-999710 Length:888 Species:Xenopus tropicalis


Alignment Length:834 Identity:315/834 - (37%)
Similarity:487/834 - (58%) Gaps:36/834 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 NEEDVEPKFKYHRLANDLKYMLNADVITCSAVHLKFLIFGTFRGRVCIFDHQGNSVYSNLSASER 82
            :|.:.|||.||.||.|.:..:|..|..:|..||.|||..||..|::.:.|.||| |......|  
 Frog    56 DESEEEPKLKYERLLNGVSEILLEDAASCMTVHEKFLALGTHSGKMFLLDIQGN-VTQKFDIS-- 117

  Fly    83 HTHQVAVNNIDVDHKGEYVATCSDDGKVNITGLFSSDNNHSLSFGKFIKVVSLEPD-SKAHIKRF 146
               .|.:|.|.:|..||||..||:||||.:.||:|.:..|.: |...||:|::.|. .|::.|:|
 Frog   118 ---SVKINQISLDESGEYVGICSEDGKVQVFGLYSREGLHEI-FDCPIKIVAVHPQFGKSNCKQF 178

  Fly   147 VVGDDKLILYERNLLKKLKPVELCSVEGSVLSICWHGNFIAWASHIGVRVYDLNERCSLGLIKWE 211
            |.|.:||:||:||.|.:.|...|...||::.:|.|.||.:|||:::||::.|:..:..:    ..
 Frog   179 VTGGNKLLLYDRNWLNRWKTSVLHEGEGNITNIKWRGNLVAWANNMGVKILDITTKQRI----TN 239

  Fly   212 VPPQE---RLENFRCHLRWSNKHTLLIGWVDTIRVCVIRKRNSIEASTGNLPVYIVDPISTFQTT 273
            :|..:   |.:.:.|.|.|.:..||:|||..:::||.:::|::.|..  :||...|:.::.|.|.
 Frog   240 IPRDDTSLRPDMYPCSLFWKDNLTLVIGWGKSVKVCFVKERHASELR--DLPSCYVEIVTQFDTE 302

  Fly   274 FYVCGLAPLSAKQLVVLGFRKE---KSSCFKALRPVLCVIEYKMNNSEEICTDSLTLRGFEEYTV 335
            :|:.|:||| ..|.|:|.|.||   ||......||.|.:::...::||||.:|::|:|||:|...
 Frog   303 YYISGIAPL-CDQFVMLFFVKETLDKSDKMLCARPRLDILQVHPDSSEEISSDAITVRGFQENEC 366

  Fly   336 NDYSLGGIIEENRFYIVAPKDIVVASLIETDDRIEWLIKHSKFEEAM---ELISANGGNVPVLSV 397
            .||.|.....|:.|||::|:|:|||...:.||.|:||:...|:|||:   |:...|.....||.:
 Frog   367 RDYRLEYSEGESLFYIISPRDVVVAKERDQDDHIDWLLARKKYEEALMAAEISQKNIKRHDVLDI 431

  Fly   398 AKLYINHLLALKKYDDAAKLCLRMLGNDKVLWEEEVFKFVKCQQLRSVSAYLPTSDECKLDPHVY 462
            ...||.||:..:.||.||:.|.::||.:..|||:||::|.|..||:::|.|||..| .:|.|.:|
 Frog   432 GLSYITHLVEKRDYDMAARKCQKILGKNMKLWEDEVYRFKKIGQLKAISKYLPRGD-LRLRPAIY 495

  Fly   463 EMVLYEFLKFDVCGFLNLIKEWPSHLYDGLAVINAIHDNFRKHYANQ-LLESLALLYSYQGDFES 526
            ||:|.||||.|..||..||:|||..||:...::.|:..:..|...|: ||::||.|::|...::.
 Frog   496 EMILDEFLKTDYEGFSTLIREWPGELYNSKTIVQALKGHLNKDPENRTLLKALAELHTYDQRYDE 560

  Fly   527 ALRMYLKLQNKDVFQLIRRYELYDVISKLIIPLIQLDRDCAFEILLDKK-KIKTEIVVHQLEHNQ 590
            ||.:||||:||:||.||.::.|:..|...|:.|:..|.:.|.::|||.: ||..|.||::|:...
 Frog   561 ALNIYLKLRNKEVFDLIHKHNLFSSIKDKIVLLMDFDTEKAVDMLLDNEDKISIEKVVNELQDRP 625

  Fly   591 EYLYWYLDSLLKKD--PSNVFQKKLISLYAIFDRNKLLPFLKRSKDYDIQEALVICKQENFYPEI 653
            |..:.||..|.|:|  ....:.:|.|||||.|||..|||||:.|....:::||.||.|.||..|.
 Frog   626 ELQHVYLHKLFKRDHHKGRKYHEKQISLYAEFDRPNLLPFLRDSTHCPLEKALEICHQRNFVEET 690

  Fly   654 VYLLGCMGGVEASEALNIIIHRIRDIEMAIEFCKEHDDSDLWNALINEFSKHPEIVTKVLDGIVD 718
            |:||..||  .:.:||.:|:..::|::.||||.||.||::||..||......|..:|.:|:.|..
 Frog   691 VFLLSRMG--NSRKALQMIMEELKDVDKAIEFAKEQDDAELWEDLILYSIDKPPFITGLLNNIGT 753

  Fly   719 YFSPAVVVGKIKMGQNIPNLRQSLIKMLRHYNLQGEILSSAQQIQLNDYFEIHSEIVTTQRRGQQ 783
            :..|.:::.:||.|..|||||.||:|:|:.||||..:....::|.::|...:..::..||.:...
 Frog   754 HVDPILLIHRIKEGMEIPNLRDSLVKILQDYNLQILLREGCKKILVSDSLSLLKKLHRTQAKAVL 818

  Fly   784 VSYEQLCSLCHRPVLMA-GTHLYCIIRLECGHVYHKPCI----QGELLKNCNEC 832
            |..|.:|..|..|:|.: .:....::...|.|.:|:.|:    ....|..||.|
 Frog   819 VDDESICEACLSPILPSDASKPLGVVAFHCRHTFHRDCLPVANTMSTLYFCNIC 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ltNP_001036415.2 WD40 repeat 33..81 CDD:293791 17/47 (36%)
WD40 <42..204 CDD:295369 65/162 (40%)
WD40 repeat 90..123 CDD:293791 16/32 (50%)
WD40 repeat 130..168 CDD:293791 17/38 (45%)
CLH 570..707 CDD:128594 59/139 (42%)
Clathrin 580..708 CDD:279031 55/129 (43%)
vps41XP_004912577.1 WD40 repeat 116..158 CDD:293791 19/47 (40%)
WD40 repeat 162..203 CDD:293791 17/40 (43%)
WD40 repeat 208..241 CDD:293791 10/36 (28%)
WD40 repeat 252..298 CDD:293791 15/47 (32%)
CLH 605..742 CDD:128594 59/138 (43%)
Vps39_2 747..848 CDD:371009 29/100 (29%)
RING-H2_Vps41 821..875 CDD:319604 13/52 (25%)
RING-H2 finger (C3H2C3-type) 825..872 CDD:319604 11/46 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 389 1.000 Domainoid score I792
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H69165
Inparanoid 1 1.050 546 1.000 Inparanoid score I1132
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D103854at33208
OrthoFinder 1 1.000 - - FOG0004492
OrthoInspector 1 1.000 - - oto103270
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3779
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
88.060

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