DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Slmap and VPS64

DIOPT Version :9

Sequence 1:NP_001036397.2 Gene:Slmap / 3355127 FlyBaseID:FBgn0040011 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_010486.3 Gene:VPS64 / 851781 SGDID:S000002608 Length:604 Species:Saccharomyces cerevisiae


Alignment Length:607 Identity:126/607 - (20%)
Similarity:233/607 - (38%) Gaps:164/607 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    97 SNNEASTKNQE------------NNNMELCDSNTVCIDR--------------RPAEVSQHAMNM 135
            ||::..||..|            :|:......:.|.||:              .|..|.|.:...
Yeast    24 SNSQGMTKTPETSPPKRPMGRARSNSRSSGSRSNVDIDQYTIPPGLDLLPTASSPPSVHQVSQQQ 88

  Fly   136 AMNSVLNANNTGVGVRVTTACSLFSPLGVLNNSALQREVASECGTLQVSSVPPTSGVDLDIGLES 200
            .::.:|             |..:.||..  |.|..|.:          :|:.||....:.|.:|:
Yeast    89 QLSPIL-------------ANKIRSPFE--NQSQDQND----------NSIDPTPAGQVTIPVEA 128

  Fly   201 APTPC--------KGAAKI-------------VLLCEPKSHKFETRSILLQPNQD-CKVGRLIAK 243
            ...|.        .|:.:.             :::.:..:..|||:.:::....| .|:||.:..
Yeast   129 VSPPALDELSKFQNGSTETLFRTGSPRKKHTHIIILKSLNATFETKFLVVPFKPDGLKLGRPVTN 193

  Fly   244 S--KAGEG-------------NAIFDCKVLSRNHAILWYTP-DGKFWVKDTKSSNGTFINDNKLG 292
            |  |...|             |..||.:|||||||.|...| .||.:::|.|||||||:|..|:.
Yeast   194 SVNKNNSGSKRDLFSQQVRPDNGNFDSRVLSRNHACLSCDPTSGKIYIRDLKSSNGTFVNGVKIR 258

  Fly   293 SDPAELHYGDIVKFGVEVIENSRQEVHGCILARVALFLPNGQEAISVEAEQMMLTVPNRISFDEV 357
            .:..||..||.|..|.::  :|:.| |..|.|.|        |.|||        :|...:..:.
Yeast   259 QNDVELKVGDTVDLGTDI--DSKFE-HRKISAYV--------EEISV--------IPLMNTVSDP 304

  Fly   358 QRLSSFLQEAAQREKSLKAKLSSLQGVLDNTRKN-------------------SAMCWQSMITED 403
            ..|....|:...:.......::.::  :|....|                   ||...|....|.
Yeast   305 TNLVMKKQDHTNKNNGNSTNINGIK--IDRGHHNQHIPIRSHLKENYTEAGVTSATTAQRAAFEA 367

  Fly   404 QLLHKIN-------ILEKKLQMMEKNIPENALRNEI--VKLLEDKTTYQLTAKEALRKVY----- 454
            .:...||       ||..:.:::......|:....|  :.:::..||.....|:.|.|::     
Yeast   368 AMFGDINNSELDDDILGPETEVLSGIFINNSAGTSINLINMIKTLTTELSLEKQELEKLHSMQNF 432

  Fly   455 -QERCDAMQMLSKMEMAYATSENECGILRAQVLTLKQTLTDFN-TRLEELQQEYMEFKKESVRQE 517
             |.....:..::|    :....||..:|:... .|::||::.| ..|:|.:.:..|.|:::.:.:
Yeast   433 MQNYTINLDFINK----HMIDMNEKHLLKLST-ALQKTLSENNDALLKESEDQLKEIKQQNNKVK 492

  Fly   518 QEAKEQESRSLEVLNGKLTTQELELKELRLQVSRIHRDLSESDTEHLKERIVLKNLDTINLDDYD 582
            .....:|.::.|    ||...|.||:||.||:          :.|..|..::.::.....:::.:
Yeast   493 SACSLKEKQNHE----KLQELESELRELNLQI----------EEERGKNLVLTQSNFNGGINNDN 543

  Fly   583 HAQDRALNERDDNESSDDDILS 604
            :|:.:..:.|::.:.::|.::|
Yeast   544 NAKVKQNDSREEKKDTEDTLIS 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlmapNP_001036397.2 FHA 216..311 CDD:238017 40/111 (36%)
FHA <225..326 CDD:224630 42/117 (36%)
VPS64NP_010486.3 FHA 126..304 CDD:224630 54/196 (28%)
SMC_prok_B <406..>580 CDD:274008 35/179 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 63 1.000 Domainoid score I2465
eggNOG 1 0.900 - - E1_COG1716
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003045
OrthoInspector 1 1.000 - - otm46962
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR15715
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R322
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.030

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