DRSC/TRiP Functional Genomics Resources

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Protein Alignment Slmap and Traf3ip3

DIOPT Version :10

Sequence 1:NP_001036397.2 Gene:Slmap / 3355127 FlyBaseID:FBgn0040011 Length:897 Species:Drosophila melanogaster
Sequence 2:NP_001014154.1 Gene:Traf3ip3 / 360900 RGDID:1304848 Length:513 Species:Rattus norvegicus


Alignment Length:342 Identity:85/342 - (24%)
Similarity:157/342 - (45%) Gaps:59/342 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   356 EVQRLSSFLQEAAQREKSLKAKLSSLQGVLDNTRKNSAMCWQSMITEDQLLHKINILEKKL-QMM 419
            ::.:||.:|:||.|||..||.|:..||.:|....:.|...|:..:.||:|..|:..||.:| ..:
  Rat   194 DIIQLSEYLKEALQRELILKQKMVILQDLLPALIRASDSSWKGQLNEDKLKGKLRSLENQLYTCL 258

  Fly   420 EKNIPENALRNEIVKLLEDKTTYQLTAKEALRKVYQERCDAMQMLSKMEMAYATSENECGILRAQ 484
            :|:.|. .::..::.:...:::|:..||.:|:||.:|:..|.|.|.:.:::.|.:|.:|...::|
  Rat   259 QKHSPW-GMKKVLLDMENQRSSYEQKAKASLQKVLEEKMCAEQQLQRAQLSLAVAEQKCQEWKSQ 322

  Fly   485 VLTLKQ---TLTDFNTRLEELQQEYMEFKKESV--RQEQ--------EAKEQESRS-LEVLNGKL 535
            ...||:   ||.|.:..||. |...::.|.:..  |..|        |.:.||.:: ||.|.|..
  Rat   323 YEALKEDWRTLGDQHRELES-QLHVLQSKLQGADSRDSQMSQALRLLENEHQELQTKLESLQGDR 386

  Fly   536 TTQELELKELRLQVSRIHRDLSESDTEHLKERIVLKNLDTINLDDYDHAQDRALNERDDNESSDD 600
            ..|..|.::|:.|:.:     ||.:.:.|..|:  :.|.::       .|:::|..|:     .:
  Rat   387 EQQSSETQDLQDQLKK-----SEEERQALMSRV--QQLQSL-------LQNQSLQLRE-----QE 432

  Fly   601 DILSVSPAKNVLSETKKRKLKLSNPDLEEGNYKSNVLRLLKNSDLGKGEEGSSVLKAIFNGDDEA 665
            .:|.           |.:.|.:.||.|.....|..          |.|:|....|:...  ..|.
  Rat   433 KLLK-----------KDQGLPVWNPKLSFDEVKPE----------GTGKEKVEELRDQL--QKET 474

  Fly   666 FECKVKEEEDMANDSVP 682
            ::.:.||:|...:..:|
  Rat   475 YQLQAKEKERQCSQWLP 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SlmapNP_001036397.2 FHA_SLMAP 208..331 CDD:438731
EnvC 322..>558 CDD:443969 61/216 (28%)
CC1_SLMAP-like 356..417 CDD:425371 23/61 (38%)
Traf3ip3NP_001014154.1 CC1_T3JAM 190..234 CDD:409288 15/39 (38%)
Smc <298..>485 CDD:440809 52/229 (23%)
Blue background indicates that the domain is not in the aligned region.

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