DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17490 and rpl5b

DIOPT Version :9

Sequence 1:NP_001036395.2 Gene:CG17490 / 3355125 FlyBaseID:FBgn0040009 Length:707 Species:Drosophila melanogaster
Sequence 2:NP_001002106.1 Gene:rpl5b / 415196 ZFINID:ZDB-GENE-040625-93 Length:296 Species:Danio rerio


Alignment Length:213 Identity:36/213 - (16%)
Similarity:69/213 - (32%) Gaps:88/213 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 RYNTILHMSNGELYSFTSFKALNLIKWLNAVRCLAIVDVGFSVIRIENRRLLLQTY--------- 141
            :|..|:..||.::                      :..:.::  :||...::...|         
Zfish    48 KYRMIVRFSNRDI----------------------VCQIAYA--KIEGDMIVCAAYSHELPKYGI 88

  Fly   142 -VDLPDWEKDKCT-------LQHSF----------DITFDQENIFQSDWQHNEYTLTTLKVTEKE 188
             |.|.::....||       |.:.|          :||.|:.|:...|.|...:|...      :
Zfish    89 SVGLTNYAAAYCTGLLLARRLLNKFGLDKVYDGQVEITGDEFNVESIDGQPGAFTCYL------D 147

  Fly   189 EEFARTLFGTRAAEQNYIHIFSI------GGHVFALAYNYKTTS----DSTGPDYNIELLCIYAA 243
            ...|||..|.:        :|..      ||    |:..:.|..    |....::|.|   ::..
Zfish   148 AGLARTTTGNK--------VFGALKGAVDGG----LSIPHSTKRFPGYDVESKEFNAE---VHRK 197

  Fly   244 HV------KFIKLLPMEN 255
            |:      ::::||..|:
Zfish   198 HILGLNIAEYMRLLMEED 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17490NP_001036395.2 None
rpl5bNP_001002106.1 PTZ00069 1..295 CDD:240254 36/213 (17%)
Ribosomal_L18p 26..173 CDD:279233 28/166 (17%)
Ribosomal_L18_c 192..282 CDD:290906 5/27 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0256
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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