DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG40006 and SCARB1

DIOPT Version :9

Sequence 1:NP_001036401.1 Gene:CG40006 / 3355123 FlyBaseID:FBgn0058006 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_001354910.1 Gene:SCARB1 / 949 HGNCID:1664 Length:552 Species:Homo sapiens


Alignment Length:457 Identity:130/457 - (28%)
Similarity:224/457 - (49%) Gaps:27/457 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 VIGFLAIITSTLIKVLEPYDLIFKWKLI----MTEGGEIFNLWAQPPVDLYIKIYLFNITNANAF 156
            |.|.|..:...::.|:.|  .:.|.:::    :......||:|.:.|:..|:.:|.|::.|.:..
Human    16 VAGLLCAVLGAVMIVMVP--SLIKQQVLKNVRIDPSSLSFNMWKEIPIPFYLSVYFFDVMNPSEI 78

  Fly   157 LAGREQLRVEQVGPYVYKEIMTHENVTFNSNNTMSSTPSHPLVWQEEMSGNCREDDEVVMLNIAM 221
            |.| |:.:|.:.|||||:|.....|:|||:|:|:|........:|...| :..|.|.:||.||.:
Human    79 LKG-EKPQVRERGPYVYREFRHKSNITFNNNDTVSFLEYRTFQFQPSKS-HGSESDYIVMPNILV 141

  Fly   222 LAISHLTANQPFLVRMALKTLLLSTKSE-PIVRTTAKEFMFGYPSALATLGNTFLPNWISF-EKV 284
            |..:.:..|:|..::: :.||..:|..| ..:..|..|.|:||...|..|.|.:.|....| :|.
Human   142 LGAAVMMENKPMTLKL-IMTLAFTTLGERAFMNRTVGEIMWGYKDPLVNLINKYFPGMFPFKDKF 205

  Fly   285 GLIDRMYDFSTDFETFYTGVPNPALSGLYASYRGETTLPQWDGDHCSNIEFASDGTKFKSFIQPN 349
            ||...:.:..:...|.:|||.|.:...|...:.|.:.:..|..|.|:.|. .:.|..:..|:.|.
Human   206 GLFAELNNSDSGLFTVFTGVQNISRIHLVDKWNGLSKVDFWHSDQCNMIN-GTSGQMWPPFMTPE 269

  Fly   350 ETVKFFRKSMCRPINLYRVGNEKTYGSLKG---YNYVFEDNAFDNGATNEANKCFCRKGDCQPVG 411
            .:::|:....||.:.|.    .|..|..:|   |.:|.....|.||:....|:.||   .|...|
Human   270 SSLEFYSPEACRSMKLM----YKESGVFEGIPTYRFVAPKTLFANGSIYPPNEGFC---PCLESG 327

  Fly   412 LIDVTDCYYGFPISLSFPHFMNGDVGLQQNVTGISPDPDKHSSTFVIQPESGLPLSLSVKVQINM 476
            :.:|:.|.:..|:.||.|||:|.|..|.:.|||:.|:.:.||....|.|.:|:|::.|||:|:::
Human   328 IQNVSTCRFSAPLFLSHPHFLNADPVLAEAVTGLHPNQEAHSLFLDIHPVTGIPMNCSVKLQLSL 392

  Fly   477 HFKDLSNFPVVSVFNHLTVPMLWFEIMMSKLPDSLDSRFNFY--LNILPLVNPLGFWSGILLGIS 539
            :.|.::..........:.:|:|||....:...::|.:   ||  |.::|.|.....:..:.||..
Human   393 YMKSVAGIGQTGKIEPVVLPLLWFAESGAMEGETLHT---FYTQLVLMPKVMHYAQYVLLALGCV 454

  Fly   540 LL 541
            ||
Human   455 LL 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG40006NP_001036401.1 CD36 91..545 CDD:279474 130/457 (28%)
SCARB1NP_001354910.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165148207
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.876977 Normalized mean entropy S6407
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
65.800

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