DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG40006 and scarb2a

DIOPT Version :9

Sequence 1:NP_001036401.1 Gene:CG40006 / 3355123 FlyBaseID:FBgn0058006 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_775366.1 Gene:scarb2a / 192340 ZFINID:ZDB-GENE-020419-29 Length:531 Species:Danio rerio


Alignment Length:501 Identity:132/501 - (26%)
Similarity:229/501 - (45%) Gaps:38/501 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    94 LLVIG---FLAIITSTLIKVLEPYDLIFKWKLIMTEGGEIFNLWAQPPVDLYIKIYLFNITNANA 155
            ||::|   .||.:..|:|:..      .|.::.:.|...:.:.|..||..:|::.:.||:||.:.
Zfish    18 LLILGIALLLAQVFQTMIQER------IKKEITLAENSRVLDGWINPPPPVYMQYFFFNVTNPDE 76

  Fly   156 FLAGREQLRVEQVGPYVYKEIMTHENVTFNSNNT-MSSTPSHPLVWQEEMSGNCREDDEVVMLNI 219
            ||||:|:.:|.|:|||.|:|....||||:..|.| :.:|.....|:...||....|.|.|..:||
Zfish    77 FLAGKEKAKVTQMGPYTYREYRPRENVTYLENGTKIFATNPKSFVFLRNMSAGDPEVDRVTTVNI 141

  Fly   220 AMLAISHLTANQPFLVRMALKTLLLSTKSEPIVRTTAKEFMFGYPSALATLGNTFLPNWISFEKV 284
            .|:|:.:...:..|.||.|:...:.|......:..|..|.::|:...|.|..:...|.  ..|..
Zfish   142 PMIAVMNELNSYSFFVRTAVSMYMGSMGMGLFMNRTVHEILWGFKDPLLTKLHAMRPE--VDEHF 204

  Fly   285 GLIDRMYDFSTDFE---TFYTGVPNPALSGLYASYRGETTLPQWDGDHCSNIEFASDGTKFKSFI 346
            ||   ||:.:...|   .|:||..|....|...::.|.:.:..|..:. ||:...:||:.|.:|:
Zfish   205 GL---MYNKNGTHEGEFVFHTGEKNYMNYGKIDTWNGISQMNWWSSNQ-SNMINGTDGSVFHTFL 265

  Fly   347 QPNETVKFFRKSMCRPINLYRVGNEKTYGSLKGYNYVFEDNAFDNGATNEANKCFC-RKGDCQPV 410
            ...|.:..|...:||.|:|..|.:.:..| :..:.:....:.......|.||..|| ..|||...
Zfish   266 SRKELLYIFAADLCRSIHLGYVRDMEVKG-IPAFRFAPPSDVLAPPDENPANAGFCVPAGDCLGK 329

  Fly   411 GLIDVTDCYYGFPISLSFPHFMNGDVGLQQNVTGISPDPDKHSSTFVIQPESGLPLSLSVKVQIN 475
            |::.|:.|..|.||.:|||||...|......:.|::|:.::|.:...|.|.:|:|:....:.|:|
Zfish   330 GVLKVSVCRQGAPIVVSFPHFYQADERYINAIEGMNPNEEEHETYLDINPTTGVPIRACKRAQLN 394

  Fly   476 MHFKDLSNFPVVSVFNHLTVPMLWFEIMMSKLPDSLDSRFNFYLNILPLVNPLGFWSGILLGISL 540
            :..|.:..||.....|....|:::.. ..:.:.|...::....|.|:.:|      |...:.|..
Zfish   395 IILKRVRGFPNTKFLNETIFPIMYVN-ETATIDDESAAQMRMLLLIVTVV------SNFPVIILA 452

  Fly   541 LGYAITKATLHMSTFSRRAANITDVKYVRANLIQNIAGEAANHAYS 586
            ||..:....:.:...:|:          |.|.::.|....|.|:::
Zfish   453 LGVILLVVLIFLVCRNRQ----------RKNEVKRIDFTEAFHSFA 488

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG40006NP_001036401.1 CD36 91..545 CDD:279474 126/458 (28%)
scarb2aNP_775366.1 CD36 30..463 CDD:279474 121/452 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
33.020

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