DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG40006 and scav-1

DIOPT Version :9

Sequence 1:NP_001036401.1 Gene:CG40006 / 3355123 FlyBaseID:FBgn0058006 Length:689 Species:Drosophila melanogaster
Sequence 2:NP_508919.2 Gene:scav-1 / 180812 WormBaseID:WBGene00015389 Length:563 Species:Caenorhabditis elegans


Alignment Length:562 Identity:117/562 - (20%)
Similarity:200/562 - (35%) Gaps:119/562 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    93 ILLVIGFLAIITSTLIKVLEPYDLIFKWKL-------IMTEG--GEIFNLWAQPPVDLYIKIYLF 148
            |:.:|| .|::.:.|:.||..:..|...::       :..:|  ....:.|........::.:::
 Worm    14 IIFLIG-AALLVAGLVIVLNVFPNIVNNQINDSKVLGLNADGTLNSFTDSWVNSKYISTMQYWVY 77

  Fly   149 NITNANAFLAGREQLRVEQVGPYVYKEIMTHENVTFNSNNT-MSSTPSHPLVWQEEMSGNCREDD 212
            :.||....:.......|.:.|||.:.||:|.:.:.|:.|.. |........|:....|  |...|
 Worm    78 DYTNTIGIMNRAIYPDVREKGPYAFDEILTMDKLNFSENGEFMEFRQIQTFVFNPNKS--CAGCD 140

  Fly   213 ------------------------EVVMLNIAMLAISHL------TANQP-----FLVRMALKTL 242
                                    |.::.|.....|.|.      .|||.     .|:...|.||
 Worm   141 PYKDKVLIPDMGFQVGIDQIDTVIEGILKNPLAATICHAIMKGKPNANQTCSNLGALIEGELGTL 205

  Fly   243 LLSTKSEPIVRTTAKEFMF-GYPSALATLGNTFLPNWISFEKVGLIDRMY--------------- 291
            :......|....|..:.:| ||.:       .|:..::. |.:|::..::               
 Worm   206 ISLFNVSPFTTVTVDQLLFSGYKT-------PFVEKFLD-EALGMLHFLFGTAPKPLDDPPIQLN 262

  Fly   292 ---DFSTDFETFYTGVPNPALSGLYASYR-----------GETTLPQW----DGDHCSNIEFA-- 336
               ..|....|..||..:|..:|....:|           |.|..|.|    :..:|.:...|  
 Worm   263 PLNGTSDIINTVLTGKTDPLKAGYMTEFRSISNNSLFNSIGNTLPPMWWPYANKTYCKDPNSALV 327

  Fly   337 ---SDGTKFKSFIQPNETVKFFRKSMCRPINLYRVGNEKTYGSLKGYNYVFEDNAFDNGATNEAN 398
               ::|..||:|::..:.:..|...:||.|: :....|.|....|||.:|.....||........
 Worm   328 LTGTNGDYFKNFVKKTDILPAFVSDVCRTIH-FVFDREVTVKGFKGYRFVMPPTQFDYSLDENCG 391

  Fly   399 KC---------FCRKGDCQPVGLIDVTDCYYGFPISLSFPHFMNGDVGLQQNVTGISPDPDKHSS 454
            .|         :..:..|.|.||:|::.| .|.||.:|.|||......:.:.|....|..|...:
 Worm   392 YCIPLKYGSYEYPAQSACLPSGLLDISQC-TGGPIIMSKPHFYQASKVVSKFVPRFKPTYDNDET 455

  Fly   455 TFVIQPESGLPLSLSVKVQINM---HFKDLSNFPVVSVFNHLTVPMLWFE---IMMSKLPDSLDS 513
            ...|:|.:|..|....::||||   .||.:.::   ||......|:.|..   .|.....|.|:|
 Worm   456 MLDIEPNTGTVLQAQKRLQINMLVNQFKHIRSY---SVMRPGAYPLAWVNESFYMDQNTIDQLNS 517

  Fly   514 RFNFYLNILPLVNPLGFWSGILLGISLLGYAITKATLHMSTF 555
            :.   ...:..||.: .|..:.||..|:..:|....:....|
 Worm   518 QL---FTPVSTVNTI-CWIAVGLGAGLIALSIVMVIVSFCCF 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG40006NP_001036401.1 CD36 91..545 CDD:279474 115/550 (21%)
scav-1NP_508919.2 CD36 19..546 CDD:279474 113/546 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3776
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1106566at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11923
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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