DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG40006 and cd36l

DIOPT Version :10

Sequence 1:NP_001036401.1 Gene:CG40006 / 3355123 FlyBaseID:FBgn0058006 Length:689 Species:Drosophila melanogaster
Sequence 2:XP_002933143.3 Gene:cd36l / 100496002 XenbaseID:XB-GENE-5870091 Length:483 Species:Xenopus tropicalis


Alignment Length:461 Identity:121/461 - (26%)
Similarity:196/461 - (42%) Gaps:71/461 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 GFLAIITSTLIKV--LEPYDLIFKWKLIMTEGGEIFNLWAQPPVDLYIKIYLFNITNANAFLAGR 160
            |..|::...|..|  :..::.:.|..:| .||...|:.|..|...:|...:::::.|.|..:.|.
 Frog    22 GLFAVVGIVLFPVNNILNHEAVTKTSVI-EEGTAAFDNWVLPRSPVYRSFWIYHVRNPNDIINGG 85

  Fly   161 EQLRVEQVGPYVY-------KEIMTHENVTFNSNNTMSSTPSHPLVWQEEMSGNCREDDEVVMLN 218
            :. .::|.|||.|       ..|..|||.      |||....:..::|..||....||...| ||
 Frog    86 KP-ELQQKGPYTYLVRRIPKLGITQHENF------TMSYLQYNDAIFQRHMSVGSEEDTHTV-LN 142

  Fly   219 IAMLAISHLTANQPFL---VRMALKTLLLSTKSEPIVRTTAKEFMFGY----------PSALATL 270
            :|:       |:.|.:   ....|.|.:.::.|......|.||.::||          |....|.
 Frog   143 VAV-------ASTPDMFPDYHEMLNTAITNSSSSLFQVRTVKELLWGYNDPFLEQIPFPDIDTTT 200

  Fly   271 GNTFLPNWISFEKVGLIDRMYDFSTDFETFYTGVPNPALSGLYASYRGETTLPQWDGDHCSNIEF 335
            |       :.:...|.:|..|:       .|.|..:.:...:...|:||.:|..|:||:|:.|. 
 Frog   201 G-------VFYPYNGTLDGPYN-------VYNGKDDISKVAVIERYKGERSLSYWNGDNCNMIN- 250

  Fly   336 ASDGTKFKSFIQPNETVKFFRKSMCRPINLYRVGNEKTYGSLKGY---NYVFEDNAFDNGATNEA 397
            .:|...|..|.:....:.||....||  :||.| .||.| .|||.   .:|.....|.:.|.|..
 Frog   251 GTDAFLFSPFNKKKNHLFFFSPDACR--SLYGV-FEKEY-DLKGIKMNRFVVPKEVFASSAENSD 311

  Fly   398 NKCFCR----KGDCQPVGLIDVTDCYYGFPISLSFPHFMNGDVGLQQNVTGISPDPDKHSSTFVI 458
            |.|||:    ..:|...|::::..|....||.||.|||:.|...|...|.|:.|:..:|.|...:
 Frog   312 NHCFCKDMKVTRNCTADGILELRACRDRKPIFLSLPHFLYGSQFLLDAVGGLKPNEYEHRSYIDV 376

  Fly   459 QPESGLPLSLSVKVQINMHFKDLSNFPVVS-VFNHLTVPMLWFEIMMSKLPDSLDSRFNFYLNIL 522
            :|.:|..|..:.::|||:.|:..:...|:| :.:....|:||.. ..|.:.|.....|...    
 Frog   377 EPVTGNALHYAKRLQINVMFQQTNKIDVMSKLQSGFVFPVLWLN-ETSLITDDAAKDFKAI---- 436

  Fly   523 PLVNPL 528
             ::||:
 Frog   437 -VINPM 441

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG40006NP_001036401.1 CD36 96..545 CDD:460076 121/461 (26%)
cd36lXP_002933143.3 CD36 19..464 CDD:460076 121/461 (26%)

Return to query results.
Submit another query.