DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cht10 and Chi3l3

DIOPT Version :9

Sequence 1:NP_001036422.1 Gene:Cht10 / 3355116 FlyBaseID:FBgn0250907 Length:2286 Species:Drosophila melanogaster
Sequence 2:XP_008759605.2 Gene:Chi3l3 / 295351 RGDID:1308790 Length:401 Species:Rattus norvegicus


Alignment Length:389 Identity:139/389 - (35%)
Similarity:212/389 - (54%) Gaps:41/389 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   963 SHYKVICYFTNWAWYRKGIGRFTPDDINTELCTHVIYGFAVLDYSELVLRTHDSWADVENNFYTR 1027
            |.|:::||:|:||..|..:|.|...:|:..||||:||.||.:..:|::..:.....|     |..
  Rat    20 SSYQLMCYYTSWAKDRPTVGSFKIGNIDPCLCTHLIYAFAGMRNNEIINTSEQDLID-----YEA 79

  Fly  1028 VTSLKSKG--IKVSLALGGWNDSQGDKYSRLVRSPMARSRFVRHALEFIEKYGFEGLDLDWEYPV 1090
            :..||.:.  :|..||:|||..... .:|.:|.:|..|..|::..::|:.:|.|:||:|||:|| 
  Rat    80 INYLKDRNTELKTLLAIGGWKFGSA-PFSAMVSTPQNRQTFIKSVIKFLRQYKFDGLNLDWQYP- 142

  Fly  1091 CWQTECNKGS-TEEKDGFTAWVQELSEAFR--------PRGLMLSTAVSPSRKIIDAGYDIPQLS 1146
                 .::|| .::|..|:..|||:.:||.        || |:|:..|:.....|.:||.||:||
  Rat   143 -----GSRGSPPKDKHLFSVLVQEMRKAFEKESTEQEIPR-LLLTATVAGVIDTIQSGYKIPELS 201

  Fly  1147 RYFDWIAVMTYDFHGHWDKKTGHVAPLYHHPDDD--FEYFNVNYSINYWMEKGAPSQKLVMGIPL 1209
            :..|:..||||:.|...:..|...:|||..|.|.  :.|.||:..|:||.:.||..:||::|.|.
  Rat   202 QSLDYFQVMTYNLHDFQNGYTRENSPLYQSPSDTGIYAYLNVDAIISYWKDNGAAREKLIVGFPA 266

  Fly  1210 YGQSFTLENTNSSGLNAKAPAPGEAGEFTRAAGFLAYYEICERVNR------QGWQVVHDEFGRM 1268
            ||.:|.|.:.:::|:||...:.|..|:||..||..||||||..:|.      .|.|.|       
  Rat   267 YGHNFILSDPSNTGINAPIVSTGPPGKFTGEAGLWAYYEICTFLNDGATDLWDGPQEV------- 324

  Fly  1269 GPYAYKGTQWVSYDSPDMVRKKSLLVRSLKLGGGMVWALDLDDFKNR-CGNGVHPLLTEIHNVL 1331
             |||.:|..||.||:....:.|:..::..||||.|||.||:|||... |..|..||.:.:.:.|
  Rat   325 -PYAVQGNVWVGYDNVKSFKIKAQWLKDNKLGGAMVWPLDMDDFTGSFCQQGRFPLTSTLKHYL 387

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht10NP_001036422.1 Glyco_18 220..565 CDD:214753
GH18_chitolectin_chitotriosidase 221..586 CDD:119351
ChtBD2 697..737 CDD:214696
CBM_14 801..848 CDD:279884
CBM_14 875..918 CDD:279884
Glyco_18 966..1310 CDD:214753 129/362 (36%)
GH18_chitolectin_chitotriosidase 967..1331 CDD:119351 136/383 (36%)
Glyco_18 1410..1753 CDD:214753
GH18_chitolectin_chitotriosidase 1411..1774 CDD:119351
ChtBD2 1834..1871 CDD:214696
Glyco_18 1909..2253 CDD:214753
GH18_chitolectin_chitotriosidase 1910..2274 CDD:119351
Chi3l3XP_008759605.2 GH18_chitolectin_chitotriosidase 24..387 CDD:119351 136/383 (36%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D264489at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11177
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.020

Return to query results.
Submit another query.