DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cht10 and lmd-5

DIOPT Version :9

Sequence 1:NP_001036422.1 Gene:Cht10 / 3355116 FlyBaseID:FBgn0250907 Length:2286 Species:Drosophila melanogaster
Sequence 2:NP_001309512.1 Gene:lmd-5 / 187942 WormBaseID:WBGene00020141 Length:1518 Species:Caenorhabditis elegans


Alignment Length:1487 Identity:293/1487 - (19%)
Similarity:494/1487 - (33%) Gaps:516/1487 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   687 VQPSNCKSGEF-------FADSNNCNAYYHCFFAGELQQQFCPSGLHWNNEAKG---CDWPSSAQ 741
            |..:.|.|.:|       ..:.:.|....:.|.....:.:....|:..:|...|   |.|.:..:
 Worm   254 VDDTICVSKKFSCQHRIEILNGDTCGFLENAFQTNNTEMEIANEGVKCDNLPIGRMMCVWSADDR 318

  Fly   742 CSLKLDQHLSTSYPNPIQTS-------KKPETT------LKP-----NKKPSEISTHHQVNSTSS 788
               ||.....|.:......|       ||...|      |.|     |::.....:...:.|.|:
 Worm   319 ---KLPNMTCTEWKTITDDSSDCYSEAKKLSITIDLFKFLNPRVNCVNRQKILRGSRICIKSQST 380

  Fly   789 RPQYMRPTILECTEGDYYPHRNCRKYYICVNKALVPSECGGDLHWDGI--KKLCDWPENVQCVTS 851
            :|         ||            |:..||:.   ..|...:....|  :||.:.....:|...
 Worm   381 KP---------CT------------YFQMVNQF---QSCEDIMQRSQISMRKLLELNPTFRCDKM 421

  Fly   852 KKYLKIIKSSSANEEDPCKGEKRV-PYPGNCSKYLFCLWNRLQASDCPPGLHYNERIGNCDWPAA 915
            .||.:|........::.|...:|| |...||.|.:           .|.||              
 Worm   422 AKYEQICLGIGPFRQEQCISSRRVTPENDNCDKIM-----------RPTGL-------------- 461

  Fly   916 AKCNPKGSESSEEAELNAMPKPPTPQTPSSHLRPTYPTEKPVPKPRDSHYKVICYFTNWAWYRKG 980
                     |.|:.|.               |.|                :|.|: .::.|    
 Worm   462 ---------SREQIEA---------------LNP----------------EVNCW-ESFEW---- 481

  Fly   981 IGRFTPDDINTELCTHVIYGFAVLDYSELVLRTHDSWADVENNFYTRVTSLKSKGIKVSLALGGW 1045
                     .|.:||..:                  ..|.:|.....|||||.    ||..|...
 Worm   482 ---------GTLICTASL------------------GVDTKNAQNLVVTSLKD----VSPELARK 515

  Fly  1046 ND---------SQGDKYSRLVR---SPMARSRF--VRHALEFIEKYGFEGLDLDWEYPVCWQTEC 1096
            .|         ::.|...:|||   :|...|:.  :..:.|.|.|.      ||.::|:..|:.|
 Worm   516 YDIYTSNPTEAAENDMNEQLVRDLQNPNVNSKLKELYKSDERIRKI------LDSQHPLPRQSYC 574

  Fly  1097 NKGSTEEKDGFTAWVQELSEAFRPRG-------LMLSTAVSPSRKIIDAGYDIPQLSRYFDWIAV 1154
            ::            :|:.:..:..:.       |::...|..| ..:..|.|..:.|:....:..
 Worm   575 DE------------IQKTTMGYNIKSCYCGNEELLIYCQVLVS-NFMTEGEDFNEESQNVTTLRA 626

  Fly  1155 MTYDFHGHWDKKTGHVAPLYHHP---DDDFEYFN------------------------------V 1186
                    :..|.| |...::||   :|..|||.                              :
 Worm   627 --------FRSKRG-VGCNFNHPFSGEDSLEYFTKIHGGCFGGGCSFPVGFLEISIDADICAPLI 682

  Fly  1187 NY---SINYWMEKG----------APSQKLVM------------------------GIPL----- 1209
            ::   |::|..:.|          ||..|.:.                        |:.|     
 Worm   683 SFGIDSLSYCTKDGNDCNQVDKGDAPGLKFLTERKVGGKFSLCAIGSKLVKILSKGGVSLCWDIV 747

  Fly  1210 ----YGQSFTLENTNSSGLNAKAPAPGEAGEFTRAAGFLAYYEICERVNRQG-----WQVVHDEF 1265
                ||  |..:.:.||.||..| ...|.|...:..| ||:.|||:||:.:.     |:..:.|.
 Worm   748 ATDYYG--FVGKLSISSDLNLIA-FDLEGGAVMKVHG-LAFPEICDRVDFECEDYCIWKNKNWEN 808

  Fly  1266 GR---------MGPYAYKGTQWVS--YDSP-----DMVRKKSLLVRSLKLGGGMVWALDLD-DFK 1313
            |:         :..:.::|.:..|  :|:|     |..::.::::|:.:     ....|.| |.:
 Worm   809 GKAYGFFNFRLLKVFGFEGIKIFSETFDAPKRVGCDAGKEAAVVIRNER-----TCRDDQDRDVE 868

  Fly  1314 NRCGNGVHPLLTEIHNVLKDPPSLMEIPGPIETTPTEYPGM----------EEEI--------HE 1360
            .||.:|...:..|          .:::.......|..:.|.          |::|        .:
 Worm   869 RRCWSGDDMMNWE----------FLQLEWGFAFKPKPFGGTLFVCEFIDRHEQKIGFDVYGGKSK 923

  Fly  1361 SNGE--------------GPEVQPIEAVMQTCEN------EGEEHEGILDPNHVLEEENIEATEM 1405
            :.|:              |.|....:.:|.:.:|      |.|:.....|........::.|...
 Worm   924 NKGKNTFYYAVRNDGIYFGTEKYKEDQLMGSWDNVCEEDKESEDDSSTADSAEPTGSSSVPAASC 988

  Fly  1406 ATEFKIICYFTNWAWYRQGGGKFLPEDIDSDLCTHIIYGFAVLSRDNLT----IQPHDSWADLDN 1466
            ..  :|:.|:|.|      |.:.:.|:....| ||:|:.|..:..|...    :...|.......
 Worm   989 GK--RIVGYYTGW------GEREITENQLKKL-THVIFAFVAMYADGSVKFGPVSADDPGPQAGK 1044

  Fly  1467 KFYERIVAYRKK------GAKVTVAIGGWNDSAGDKYSRLVRNPEARSRFIRNVLDFIEEYNFDG 1525
            |...|.|..:||      |.:|..|:|||::|  ..:|.:..:...|..|:.:|..|||.:..||
 Worm  1045 KAERRFVDMKKKARAVNSGVRVLFAVGGWDNS--QYFSSVAADSGKRRNFVDSVASFIEHHKIDG 1107

  Fly  1526 LDLDWEYPVCWQVDCKKGTAEEKIGFSALVRELFYAFQPRG-----LILSAAVSPNKKVIDAGYE 1585
            :|||||||     :.|.|..:..:.....:||.|.....|.     .:::.|.:..:..:..||:
 Worm  1108 VDLDWEYP-----EMKGGDKQNHVTLIRELRERFNGMASRNNRKDPYLITLASAAGEWNLREGYD 1167

  Fly  1586 VAELSHYFSWISVMAYDYHGQWDKK----TGHVAPMY--SHPEGTANFNANFSMNYWISMGADRR 1644
            :..:.:|..:|:||.|||:|.|:.|    ||..||:|  |....:...||:|||.::........
 Worm  1168 LKGILNYADFINVMTYDYYGAWESKWGAYTGTPAPLYFGSLKGFSGKLNADFSMKFYACNTKKPS 1232

  Fly  1645 KLVMGIPLYGQSFSL------AETTKHQLNAPTYGGGEAGEATRARGFLAYYEICLKIRHHRWNV 1703
            :|.||:|.||:.:..      |.....:..||..|..|.|           |.....:....||.
 Worm  1233 QLTMGVPFYGRYWKNVLEPIDASDNMWRTAAPQNGKYEGG-----------YVGWRNLEKEGWNK 1286

  Fly  1704 VRDT--KGRIGPFAYHGD--QWVSFDDVPMIRHKSEYIKAMGLGGAMIWALDLDD---------- 1754
            ...|  |....|:..:..  .::.|::...::.|.:|.....|||.|||||||||          
 Worm  1287 GSATWHKKTKTPYIMNNGARMFLGFENERSLKEKMDYATNRNLGGLMIWALDLDDDADTLLNLVS 1351

  Fly  1755 FKNVC--------------------------------EC-ESYPLLKAINRVL----RGF----- 1777
            ...:|                                :| :|.||:.....|.    .||     
 Worm  1352 SAGLCSGGSGDKITYKCVPIDDVRWWTPENSDENRQGQCGKSAPLINGFYPVCDPDDPGFSCCGA 1416

  Fly  1778 ----GGPQPKCLLENPKSTMK-PN--IKPPFRP-------TINAPS------GPNLDSPTQNVSL 1822
                |..:..|..:...:..| |:  :|.|.:|       |.:||.      |.:::        
 Worm  1417 AGYCGSEEEYCECKGCVNYRKDPDLIVKEPVKPSREIQWYTQDAPDGKRGRCGKDIE-------- 1473

  Fly  1823 NVLSIKCHSKNYLAHEWDCTKYYICEHGTYVERSCPLGLQWNKTYCDWPTNVQSSLG 1879
                 |.:.|..:.:..|.|| |.|.:|.|    |.:|.::.|  ||...|.:::.|
 Worm  1474 -----KINGKMPICNPDDDTK-YCCSNGGY----CGIGDEYCK--CDGCVNYRTTNG 1518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cht10NP_001036422.1 Glyco_18 220..565 CDD:214753
GH18_chitolectin_chitotriosidase 221..586 CDD:119351
ChtBD2 697..737 CDD:214696 7/49 (14%)
CBM_14 801..848 CDD:279884 8/48 (17%)
CBM_14 875..918 CDD:279884 8/43 (19%)
Glyco_18 966..1310 CDD:214753 83/464 (18%)
GH18_chitolectin_chitotriosidase 967..1331 CDD:119351 89/485 (18%)
Glyco_18 1410..1753 CDD:214753 101/373 (27%)
GH18_chitolectin_chitotriosidase 1411..1774 CDD:119351 109/436 (25%)
ChtBD2 1834..1871 CDD:214696 12/36 (33%)
Glyco_18 1909..2253 CDD:214753
GH18_chitolectin_chitotriosidase 1910..2274 CDD:119351
lmd-5NP_001309512.1 LysM 22..65 CDD:197609
LysM 77..120 CDD:197609
LysM 151..194 CDD:197609
LysM 220..260 CDD:197609 1/5 (20%)
LysM 275..312 CDD:197609 5/36 (14%)
LysM 386..429 CDD:197609 10/45 (22%)
Self-incomp_S1 851..944 CDD:283566 14/107 (13%)
Glyco_18 991..1336 CDD:214753 97/369 (26%)
GH18_chitinase-like 992..1336 CDD:299167 97/368 (26%)
ChtBD1_GH18_2 1388..1435 CDD:211315 9/46 (20%)
ChtBD1_GH18_2 1462..1513 CDD:211315 15/70 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164209
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG3325
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4747
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.740

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