DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spf45 and Rbm17

DIOPT Version :9

Sequence 1:NP_001036426.1 Gene:Spf45 / 3355114 FlyBaseID:FBgn0086683 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_690037.1 Gene:Rbm17 / 76938 MGIID:1924188 Length:405 Species:Mus musculus


Alignment Length:464 Identity:161/464 - (34%)
Similarity:218/464 - (46%) Gaps:125/464 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDLYDGIDTRARSSQIDGWSSGIKMLQTQLAVKMAV----------KKPLMTPVVNLRSKRLADP 55
            |.|||.:......|:.:|||...|:||:||.||.|.          :..::.||::|:....:|.
Mouse     1 MSLYDDLGVETSDSKTEGWSKNFKLLQSQLQVKKAALTQAKSQRTKQSTVLAPVIDLKRGGSSDD 65

  Fly    56 EVTCFAP--ITTVVSKPLISGKALPSILERINRGDWDVADEYDPQRPNEYEKLKEKSNGSDKNRA 118
            ......|  :...:..|:.||.:...:|       ..:||||||..||:|||:.::.....:.:.
Mouse    66 RQIADTPPHVAAGLKDPVPSGFSAGEVL-------IPLADEYDPMFPNDYEKVVKRQREERQRQR 123

  Fly   119 GVSDREDRDDKEKDRKRGRVGRREFYRDEVSAPNLKLSGFGHR---QNDDDMYLPSPGLVAKQGG 180
            .:..:::.:::||.||    .|.|            .|||..|   .:|:|............||
Mouse   124 ELERQKEIEEREKRRK----DRHE------------ASGFSRRPDPDSDEDEDYERERRKRSMGG 172

  Fly   181 ATIAPPPSLQEMSIDSGCEATNTMPYSASS----------------------------------- 210
            |.||||.||    ::...|.....||...|                                   
Mouse   173 AAIAPPTSL----VEKDKELPRDFPYEEDSRPRSQSSKAAIPPPVYEEPDRPRSPTGPSNSFLAN 233

  Fly   211 ----VAAKIMAKYGFKDGQGLGKSEQGMAIALQVEKTSKRGGRIIHEKDVFLPPLALSPPSIGSQ 271
                ||.|||.||||::||||||.|||::.||.|||||||||:||                    
Mouse   234 MGGTVAHKIMQKYGFREGQGLGKHEQGLSTALSVEKTSKRGGKII-------------------- 278

  Fly   272 IGTSPSHKAMPPPQMVDTAAESGDI--------GYSITEIMKSPSKVVLLRNMVGPGDVDEELEP 328
                           |..|.|.|:.        ...:|||:|.|:||||||||||.|:|||:||.
Mouse   279 ---------------VGDATEKGEAQDASKKSDSNPLTEILKCPTKVVLLRNMVGAGEVDEDLEV 328

  Fly   329 EVKDECNTKYGEVNSVIIHESFGTVPEDAVKIFVEFRRIESAIKAVVDLNGRFFGGRQVRAGFYN 393
            |.|:||. |||:|...:|.|..|...::||:||:||.|:|||||||||||||:||||.|:|.|||
Mouse   329 ETKEECE-KYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYN 392

  Fly   394 YDKFKCFQL 402
            .|||:...|
Mouse   393 LDKFRVLDL 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spf45NP_001036426.1 G-patch 209..248 CDD:279867 28/77 (36%)
RRM_UHM_SPF45 307..402 CDD:241091 60/94 (64%)
Rbm17NP_690037.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..233 25/138 (18%)
G-patch 235..275 CDD:307632 27/39 (69%)
RRM_UHM_SPF45 307..401 CDD:241091 60/94 (64%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 57..88 6/30 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167837730
Domainoid 1 1.000 74 1.000 Domainoid score I9135
eggNOG 1 0.900 - - E1_KOG1996
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H13162
Inparanoid 1 1.050 225 1.000 Inparanoid score I3491
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG60100
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005833
OrthoInspector 1 1.000 - - oto93212
orthoMCL 1 0.900 - - OOG6_103640
Panther 1 1.100 - - LDO PTHR13288
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3833
SonicParanoid 1 1.000 - - X4816
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1514.790

Return to query results.
Submit another query.