DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Parp and PARP1

DIOPT Version :9

Sequence 1:NP_001104452.1 Gene:Parp / 3355109 FlyBaseID:FBgn0010247 Length:994 Species:Drosophila melanogaster
Sequence 2:NP_850165.1 Gene:PARP1 / 817690 AraportID:AT2G31320 Length:983 Species:Arabidopsis thaliana


Alignment Length:1064 Identity:359/1064 - (33%)
Similarity:561/1064 - (52%) Gaps:166/1064 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 PYLAEYARTGRATCKGCKSTISKDTLRIAVMVQSAFHDAKVPNWFHKTCFFKNQRP-SSVGDIQN 69
            |:.||||::.|::||.|||.|:|:..|:..:|||...|..:|.|.|.:|..|..:. .||.|::.
plant     7 PWRAEYAKSSRSSCKTCKSVINKENFRLGKLVQSTHFDGIMPMWNHASCILKKTKQIKSVDDVEG 71

  Fly    70 IGNLRFADQKELTDLVEN-IQEVISAQLGKKRSKAFNLALKDFGIEYAKSSRSTCRGCEQKINKD 133
            |.:||:.||:::...||: .....|...|...|...|.|..::|||.:::||:.||.|.:||.|.
plant    72 IESLRWEDQQKIRKYVESGAGSNTSTSTGTSTSSTANNAKLEYGIEVSQTSRAGCRKCSEKILKG 136

  Fly   134 LVRLRKTVYDTEVGMKYGGQPLWHHLECFAQLRS--ELGWFASGEDMPGFQSLADDDQAK----V 192
            .||    ::....|....|. :|||.:||.::.|  ||      |.:.|::|:.|.||..    |
plant   137 EVR----IFSKPEGPGNKGL-MWHHAKCFLEMSSSTEL------ESLSGWRSIPDSDQEALLPLV 190

  Fly   193 KNAIPPIKSE-----------------ELPDTKRAKMELS--DTNEEG-----EKKQRLKDQNDA 233
            |.|:|..|:|                 :..|.:::|:..|  |.:..|     .|::.::.|...
plant   191 KKALPAAKTETAEARQTNSRAGTKRKNDSVDNEKSKLAKSSFDMSTSGALQPCSKEKEMEAQTKE 255

  Fly   234 YFRFRDDIKNKMKKKDIDILLKFNNQQPVTGDTEKLFDQTADLLTFGAIESCSECNSCQFIVNKS 298
            .:..:||:|..:...::..:|:. |:|...|....|.|:.||.:.||.:..|..|:.   .::.|
plant   256 LWDLKDDLKKYVTSAELREMLEV-NEQSTRGSELDLRDKCADGMMFGPLALCPMCSG---HLSFS 316

  Fly   299 G--YICNGNHSEWTKCNKLLKEPTRSACIVPKELKALYNFLNTVKEIPSTRIFNNFPPNKSTFSR 361
            |  |.|:|..|||:||:....:|.|        :|..:       :||.           .|.::
plant   317 GGLYRCHGYISEWSKCSHSTLDPDR--------IKGKW-------KIPD-----------ETENQ 355

  Fly   362 SLLKTNKNNDV-----LVRP---------------TIPRISPPLYNLKFSIIGLKNQHKELRKRI 406
            .|||.||:...     ::||               |....|..|.:||.||.|...:.:..:|||
plant   356 FLLKWNKSQKSVKPKRILRPVLSGETSQGQGSKDATDSSRSERLADLKVSIAGNTKERQPWKKRI 420

  Fly   407 ENLGGKFEVKISENTIAIISTEL-EIQ----KKSTRMKFAEELGIHIVPIEFLDFVEADTEGAIK 466
            |..|.:|...:.:.|..::...| :|:    :|:.|||.|      ||..::|            
plant   421 EEAGAEFHANVKKGTSCLVVCGLTDIRDAEMRKARRMKVA------IVREDYL------------ 467

  Fly   467 YINSTCICSWGTDPKSRIP------KETTKSLNSNSIYTKSMPVSRTFKVKDGLAVDPDSGLEDI 525
               ..|.     ..:.::|      ::|::||             .|.|||...||...|||::.
plant   468 ---VDCF-----KKQRKLPFDKYKIEDTSESL-------------VTVKVKGRSAVHEASGLQEH 511

  Fly   526 AHVYVDSNNKYSVVLGLTDIQRNKNSYYKVQLLKADKKEKYWIFRSWGRIGT-NIGNSKLEEFDT 589
            .|:..|.|:.|:..|.::|:....||||.:|:::.||....::||.|||:|. .||.:|:||...
plant   512 CHILEDGNSIYNTTLSMSDLSTGINSYYILQIIQEDKGSDCYVFRKWGRVGNEKIGGNKVEEMSK 576

  Fly   590 SESAKRNFKEIYADKTGN---EYEQRDNFVKRTGRMYPIEIQYDDDQKLVKHESHFFTSKLEISV 651
            |: |...||.::.:||||   .:||:.||.|:.|:..|::|.|..::::.|.|....:|.|..|:
plant   577 SD-AVHEFKRLFLEKTGNTWESWEQKTNFQKQPGKFLPLDIDYGVNKQVAKKEPFQTSSNLAPSL 640

  Fly   652 QNLIKLIFDIDSMNKTLMEFHIDMDKMPLGKLSAHQIQSAYRVVKEIYNVL-----ECGSNTAKL 711
            ..|:|::||:::....:|||.|:|.:|||||||.|.||..:..:.||..:|     :.....:.|
plant   641 IELMKMLFDVETYRSAMMEFEINMSEMPLGKLSKHNIQKGFEALTEIQRLLTESDPQPTMKESLL 705

  Fly   712 IDATNRFYTLIP--HNFGVQLPTLIETHQQIEDLRQMLDSLAEIEVAYSIIKSEDVSDACNPLDN 774
            :||:|||:|:||  |      |.:|......:...:||::|.:||:|..|: ..|| |:...||:
plant   706 VDASNRFFTMIPSIH------PHIIRDEDDFKSKVKMLEALQDIEIASRIV-GFDV-DSTESLDD 762

  Fly   775 HYAQIKTQLVALDKNSEEFSILSQYVKNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFK-KLHN 838
            .|.::...:..|..:||::.::.:|:..|||.||..:.|::.:||.:.|:||..::.|.: ||.|
plant   763 KYKKLHCDISPLPHDSEDYRLIEKYLNTTHAPTHTEWSLELEEVFALEREGEFDKYAPHREKLGN 827

  Fly   839 RKLLWHGSRLTNFVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGLMLL 903
            :.|||||||||||||||:.||||||||||.|||||||||||||:|||||.||.|.::|..|||||
plant   828 KMLLWHGSRLTNFVGILNQGLRIAPPEAPATGYMFGKGIYFADLVSKSAQYCYTCKKNPVGLMLL 892

  Fly   904 SEVALGDMMECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGVEIPYGETITDEHLKSSLL 968
            ||||||::.|.|.|||::|....|||..|.|:.:|..::.......|.:|.|:.::.:...|.|:
plant   893 SEVALGEIHELTKAKYMDKPPRGKHSTKGLGKKVPQDSEFAKWRGDVTVPCGKPVSSKVKASELM 957

  Fly   969 YNEYIVYDVAQVNIQYLFRMEFKY 992
            ||||||||.|||.:|:|.::.||:
plant   958 YNEYIVYDTAQVKLQFLLKVRFKH 981

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ParpNP_001104452.1 PLN03123 6..992 CDD:215590 358/1062 (34%)
zf-PARP 10..83 CDD:279039 29/73 (40%)
zf-PARP 114..193 CDD:279039 27/84 (32%)
PADR1 270..322 CDD:285325 18/53 (34%)
BRCT 382..454 CDD:214602 23/76 (30%)
WGR_PARP1_like 526..629 CDD:153428 40/106 (38%)
parp_like 645..988 CDD:238717 157/350 (45%)
PARP1NP_850165.1 PLN03123 1..983 CDD:215590 359/1064 (34%)
zf-PARP 11..85 CDD:279039 29/73 (40%)
zf-PARP 117..186 CDD:279039 27/79 (34%)
PADR1 291..342 CDD:285325 19/61 (31%)
BRCT 399..471 CDD:214602 23/92 (25%)
WGR_PARP1_like 512..618 CDD:153428 40/106 (38%)
parp_like 634..978 CDD:238717 157/351 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 219 1.000 Domainoid score I729
eggNOG 1 0.900 - - E1_KOG1037
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1222
Inparanoid 1 1.050 536 1.000 Inparanoid score I270
OMA 1 1.010 - - QHG56136
OrthoDB 1 1.010 - - D909382at2759
OrthoFinder 1 1.000 - - FOG0006410
OrthoInspector 1 1.000 - - oto3612
orthoMCL 1 0.900 - - OOG6_101236
Panther 1 1.100 - - O PTHR10459
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4674
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.