DRSC/TRiP Functional Genomics Resources

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Protein Alignment Parp and parp-2

DIOPT Version :9

Sequence 1:NP_001104452.1 Gene:Parp / 3355109 FlyBaseID:FBgn0010247 Length:994 Species:Drosophila melanogaster
Sequence 2:NP_001022057.1 Gene:parp-2 / 3565967 WormBaseID:WBGene00004050 Length:538 Species:Caenorhabditis elegans


Alignment Length:549 Identity:140/549 - (25%)
Similarity:241/549 - (43%) Gaps:117/549 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   531 DSNNK-YSVVLGLTDIQRNKNSYYKVQLLKADKKEKYWIFRSWGRIGTNIGNSKLEEFDTSESAK 594
            |.|.: |.|.|..|:|.:|.|.:|.::||  |:...:.:....||||.. |.::|::||..:.||
 Worm     6 DENGRGYKVHLCKTNIAQNNNKFYDMELL--DEGGDFIVKLINGRIGYR-GVTQLKDFDDLDRAK 67

  Fly   595 RNFKEIYADKTGNEYEQRDN----------FVKRTGRMYPIEIQYDD-------DQK-------- 634
            :.|:..:.:||...:|:||:          .:....|....|::.::       |:|        
 Worm    68 KFFESKFYEKTHLHWEERDDEPVPNKYAVVELATNARQTEKEVKKEEPEPEPKVDEKNTRGRKKR 132

  Fly   635 -LVKHESHFF-----TSKLEISVQNLIKLIFDIDSMNKTLMEFHIDMDKM---------PLGKLS 684
             :||.:....     ..::...::.|:|.|.|.|        .|:.:.|.         |:..||
 Worm   133 GIVKEKKEIKKEEEPVEEVNEKLKELMKCICDED--------VHLGLLKQLKFNEAFGRPIDCLS 189

  Fly   685 AHQIQSAYRVVKEIY--------------------NVLECGSNTAKLIDATNRFYTLIPHNFGVQ 729
            ..|:.:.|.::.:|.                    .||...|:...|.| .|::|:||||:||..
 Worm   190 LAQLTTGYEILSKIEESIGGKSARRSTRGRPRVADRVLAVKSDGPSLHD-INKYYSLIPHSFGFC 253

  Fly   730 LPTLIETHQQIEDLRQMLDSL-AEIEVAYSIIKSEDVSDACNPLDNHYAQIKTQLVALDKNSEEF 793
            :|..|::|.:|:..|::||:| ..||.:   ::.:|:....:..|.:....:.....|:..|||.
 Worm   254 VPPKIDSHAKIQAERELLDALKGSIEAS---LELKDLKKTASSKDIYQRLYERLPCHLEPVSEEI 315

  Fly   794 SILSQYVKNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFK-----KLHNRK------------- 840
            :............|| .|.|.::|.|::....|.....|.:     |...||             
 Worm   316 AGKIGDCLAMRGPTH-CYKLSLIDAFELKDPNEIPTEAPVEVQEVPKKRGRKSTKTAAPTVPPPT 379

  Fly   841 ---LLWHGSRLTNFVGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQQNSTGLML 902
               |||||:|:||...||.:||:.  |.....|.|||.|:|||::.:||||||| .:.:....||
 Worm   380 TKRLLWHGTRVTNVFSILMNGLQF--PVGDRCGLMFGNGVYFANVPTKSANYCC-PEASKRVFML 441

  Fly   903 LSEVALGDMM-----ECTSAKYINKLSNNKHSCFGRGRTMPDPTKSYIRSDGVEIPYG--ETITD 960
            |.||...:.:     |..:.:.:.|.  .|.|.:..|:..|..|   :..:|:.....  |||.:
 Worm   442 LCEVETANPLVLYESEIDADEKMEKA--KKTSVYAAGKHTPRDT---VEINGIPAFKSNLETIEE 501

  Fly   961 EHLKSSLLYNEYIVYDVAQVNIQYLFRME 989
            |   :.|||:||::::.....|:|:..::
 Worm   502 E---TRLLYDEYVMFNKEHFKIKYVVEVK 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ParpNP_001104452.1 PLN03123 6..992 CDD:215590 140/549 (26%)
zf-PARP 10..83 CDD:279039
zf-PARP 114..193 CDD:279039
PADR1 270..322 CDD:285325
BRCT 382..454 CDD:214602
WGR_PARP1_like 526..629 CDD:153428 31/108 (29%)
parp_like 645..988 CDD:238717 105/400 (26%)
parp-2NP_001022057.1 WGR 7..89 CDD:214814 28/84 (33%)
parp_like 155..527 CDD:238717 105/395 (27%)
PARP 304..527 CDD:279038 67/234 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1037
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S4640
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D909382at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.770

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