DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Parp and Parp3

DIOPT Version :9

Sequence 1:NP_001104452.1 Gene:Parp / 3355109 FlyBaseID:FBgn0010247 Length:994 Species:Drosophila melanogaster
Sequence 2:NP_001298079.1 Gene:Parp3 / 235587 MGIID:1891258 Length:533 Species:Mus musculus


Alignment Length:534 Identity:169/534 - (31%)
Similarity:269/534 - (50%) Gaps:44/534 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   481 KSRIPKETTKSLNSNSIYTKSMPV-SRTFKVKDGLAVDPDSGLEDIAHVYVDSNNKYSVVLGLTD 544
            |.|...|...|..|.:...::.|. :|..:|........:.|::    |:.|    |...|..|:
Mouse    16 KRRQGTEEEDSFRSTAEALRAAPADNRVIRVDPSCPFSRNPGIQ----VHED----YDCTLNQTN 72

  Fly   545 IQRNKNSYYKVQLLKADKKEKYWIFRSWGRIGTNIGNSKLEEFDTSESAKRNFKEIYADKTGNEY 609
            |..|.|.:|.:|||  ::..:::.:..|||:| .:|.||:..|...|.||::||:.:.:||.|::
Mouse    73 IGNNNNKFYIIQLL--EEGSRFFCWNRWGRVG-EVGQSKMNHFTCLEDAKKDFKKKFWEKTKNKW 134

  Fly   610 EQRDNFVKRTGRMYPIEIQ--YDDDQKLVKHESHFFTS----------KLEISVQNLIKLIFDID 662
            |:||.||.:..:...||:|  .:..:.:||..|....|          .|:.:.||||..||..:
Mouse   135 EERDRFVAQPNKYTLIEVQGEAESQEAVVKALSPQVYSGPVRTVVKPCSLDPATQNLITNIFSKE 199

  Fly   663 SMNKTLMEFHIDMDKMPLGKLSAHQIQSAYRVVKEIYNVLECGSNTAK-LIDATNRFYTLIPHNF 726
            .....:...::|:.|||||||:..||...:..::.:...::..:...: |.:.::.|||:|||||
Mouse   200 MFKNAMTLMNLDVKKMPLGKLTKQQIARGFEALEALEEAMKNPTGDGQSLEELSSCFYTVIPHNF 264

  Fly   727 GVQLPTLIETHQQIEDLRQMLDSLAEIEVAYSI-----IKSEDVSDACNPLDNHYAQIKTQLVAL 786
            |...|..|.:...::..:.||..||:||:|.::     .:.|.|.:..:|||..|..::.||..|
Mouse   265 GRSRPPPINSPDVLQAKKDMLLVLADIELAQTLQAAPGEEEEKVEEVPHPLDRDYQLLRCQLQLL 329

  Fly   787 DKNSEEFSILSQYVKNTHASTHKSYDLKIVDVFKVSRQGEARRFKPFKKLHNRKLLWHGSRLTNF 851
            |....|:..:..|:|.| .::::..||:  .|:||:|:||..||:...||.||:|||||:.:...
Mouse   330 DSGESEYKAIQTYLKQT-GNSYRCPDLR--HVWKVNREGEGDRFQAHSKLGNRRLLWHGTNVAVV 391

  Fly   852 VGILSHGLRIAPPEAPPTGYMFGKGIYFADMVSKSANYCCTSQ--QNSTGLMLLSEVALGDMMEC 914
            ..||:.||||    .|.:|...|||||||...||||.|..|..  .:..|.|.|.|||||.....
Mouse   392 AAILTSGLRI----MPHSGGRVGKGIYFASENSKSAGYVTTMHCGGHQVGYMFLGEVALGKEHHI 452

  Fly   915 T-SAKYINKLSNNKHSCFGRGRTMPDPTKSY-IRSDG--VEIPYGETITDEHLK-SSLLYNEYIV 974
            | ....:....:...|...||:|.|||.:.. :..||  |.:|.|..:.....| ||...:||::
Mouse   453 TIDDPSLKSPPSGFDSVIARGQTEPDPAQDIELELDGQPVVVPQGPPVQCPSFKSSSFSQSEYLI 517

  Fly   975 YDVAQVNIQYLFRM 988
            |..:|..::||..:
Mouse   518 YKESQCRLRYLLEI 531

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ParpNP_001104452.1 PLN03123 6..992 CDD:215590 169/534 (32%)
zf-PARP 10..83 CDD:279039
zf-PARP 114..193 CDD:279039
PADR1 270..322 CDD:285325
BRCT 382..454 CDD:214602
WGR_PARP1_like 526..629 CDD:153428 36/104 (35%)
parp_like 645..988 CDD:238717 121/365 (33%)
Parp3NP_001298079.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..30 4/13 (31%)
Nuclear localization signal. /evidence=ECO:0000255 14..18 1/1 (100%)
WGR 56..154 CDD:382612 36/108 (33%)
parp_like 181..532 CDD:238717 120/358 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1037
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D121455at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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