DRSC/TRiP Functional Genomics Resources

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Protein Alignment Alg-2 and Capn3

DIOPT Version :9

Sequence 1:NP_001104459.2 Gene:Alg-2 / 3355106 FlyBaseID:FBgn0086378 Length:178 Species:Drosophila melanogaster
Sequence 2:NP_058813.2 Gene:Capn3 / 29155 RGDID:2269 Length:821 Species:Rattus norvegicus


Alignment Length:171 Identity:53/171 - (30%)
Similarity:89/171 - (52%) Gaps:11/171 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 DQQFLWDVFQRVDKDRSGHISADELQVALSNGT-------WSAFNPETIRLMIGMFDRENKGTVS 67
            :||...::|:::..| ...|.||||:..|:...       ...|..|:.|.||.:.|.:..|.::
  Rat   650 EQQQFRNIFRQIAGD-DMEICADELKNVLNTVVNKHKDLKTQGFTLESCRSMIALMDTDGSGRLN 713

  Fly    68 FKDFGALWKYVTDWQNCFRSFDRDNSGNIDKTELKTALTSFGYRLSDHLIDVL-LRKFDRFGRGT 131
            .::|..|||.:..||..|:.:|.|:||.|:..|::.|:...|:.|:..|.|:: :|..|:  ...
  Rat   714 LQEFHHLWKKIKAWQKIFKHYDTDHSGTINSYEMRNAVNDAGFHLNSQLYDIITMRYADK--HMN 776

  Fly   132 ILFDDFIQCCIVLYTLTTAFRQHDTDLDGIITIHYEQFLSM 172
            |.||.||.|.:.|..:..||...|.|.||||.::..::|.:
  Rat   777 IDFDSFICCFVRLEGMFRAFHAFDKDGDGIIKLNVLEWLQL 817

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
Alg-2NP_001104459.2 EF-hand_7 16..71 CDD:290234 15/61 (25%)
EFh 16..71 CDD:238008 15/61 (25%)
EF-hand_7 82..139 CDD:290234 19/57 (33%)
EFh 85..139 CDD:238008 18/54 (33%)
Capn3NP_058813.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..37
Peptidase_C2 77..415 CDD:395523
Domain III 418..586
Calpain_III 436..574 CDD:395848
Calpain_u2 583..653 CDD:406940 1/2 (50%)
Linker 587..649