DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpb5 and Fshb

DIOPT Version :9

Sequence 1:NP_001104334.1 Gene:Gpb5 / 3355097 FlyBaseID:FBgn0063368 Length:169 Species:Drosophila melanogaster
Sequence 2:NP_001007598.1 Gene:Fshb / 25447 RGDID:2630 Length:130 Species:Rattus norvegicus


Alignment Length:101 Identity:29/101 - (28%)
Similarity:43/101 - (42%) Gaps:8/101 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 CHRRVYTYKVTQSDLQGHECWDYVSVWSCW--GRCDSSEISDWKFPYKRSFHPVCVHAQRQLVVA 107
            ||....| .:|.| ::..||...:|:.:.|  |.|.:.::. :|.|.:.:...||...:......
  Rat    19 CHSCELT-NITIS-VEKEECRFCISINTTWCEGYCYTRDLV-YKDPARPNTQKVCTFKELVYETI 80

  Fly   108 ILKNCHPKAEDSVSKYQYMEAVNCHCQTCSTQDTSC 143
            .|..|   |..|.|.|.|..|..|||..|.:..|.|
  Rat    81 RLPGC---ARHSDSLYTYPVATECHCGKCDSDSTDC 113

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpb5NP_001104334.1 GHB_like 45..144 CDD:200450 29/101 (29%)
FshbNP_001007598.1 GHB 18..124 CDD:214502 29/101 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338115
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1362225at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11515
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.950

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