DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpb5 and tshb

DIOPT Version :9

Sequence 1:NP_001104334.1 Gene:Gpb5 / 3355097 FlyBaseID:FBgn0063368 Length:169 Species:Drosophila melanogaster
Sequence 2:XP_004910773.3 Gene:tshb / 100496349 XenbaseID:XB-GENE-485414 Length:140 Species:Xenopus tropicalis


Alignment Length:154 Identity:32/154 - (20%)
Similarity:48/154 - (31%) Gaps:62/154 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 AIFVGTSVVLVSVSSS-SLSEIKPMNNGHIVTPLGCHRRVYTYKVTQSDLQGHECWDY---VSVW 71
            ||||...:..::|..: ||                |....||..|.:.     || .|   ::..
 Frog     3 AIFVAPLLFCIAVGQAFSL----------------CLLTEYTMYVEKK-----EC-AYCLAINTT 45

  Fly    72 SCWGRCDSSE-----------ISDWKFPYKRSFH-----PVC-VHAQRQLVVAILKNCHPKAEDS 119
            .|.|.|.:.:           :|.....||:..|     |.| :|..                  
 Frog    46 ICSGFCMTKDPNLKEGLPKMLMSQKVCSYKQYIHRTVTIPGCPMHVN------------------ 92

  Fly   120 VSKYQYMEAVNCHCQTCSTQDTSC 143
             ..:.|..|::|.|..|:|..|.|
 Frog    93 -PLFSYPVAISCECDKCNTGYTDC 115

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpb5NP_001104334.1 GHB_like 45..144 CDD:200450 25/119 (21%)
tshbXP_004910773.3 GHB_like 22..116 CDD:200450 25/119 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10675
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1362225at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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