DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gpb5 and lhb

DIOPT Version :9

Sequence 1:NP_001104334.1 Gene:Gpb5 / 3355097 FlyBaseID:FBgn0063368 Length:169 Species:Drosophila melanogaster
Sequence 2:XP_002939280.1 Gene:lhb / 100038205 XenbaseID:XB-GENE-486113 Length:332 Species:Xenopus tropicalis


Alignment Length:34 Identity:9/34 - (26%)
Similarity:15/34 - (44%) Gaps:10/34 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    48 RVYTYKVTQSDLQGHECWDYVSVW------SCWG 75
            |.:|.|    :|:|:...|.::.|      ..||
 Frog   193 RAFTAK----ELEGYPKKDILTYWQAEDYPKAWG 222

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gpb5NP_001104334.1 GHB_like 45..144 CDD:200450 9/34 (26%)
lhbXP_002939280.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 57 1.000 Domainoid score I10675
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 62 1.000 Inparanoid score I5203
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR11515
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
44.060

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