DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG40470 and lta4h

DIOPT Version :9

Sequence 1:NP_001036635.1 Gene:CG40470 / 3355093 FlyBaseID:FBgn0058470 Length:941 Species:Drosophila melanogaster
Sequence 2:NP_998451.1 Gene:lta4h / 406575 ZFINID:ZDB-GENE-040426-2477 Length:611 Species:Danio rerio


Alignment Length:615 Identity:109/615 - (17%)
Similarity:208/615 - (33%) Gaps:173/615 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 VNDFSSLHVISEVRLPKEVLPLSYEVLIEPHMDNQNFEGSIRMHLRWIGDSKKVYFHAHDTLLID 103
            |:|.||...:|  :...:.|.|.|.|..:.|:    .:|.:.:.:..:.|.       ..:|.:|
Zfish     4 VSDPSSFSSLS--KCSTKHLNLIYHVDFDRHV----LKGKVALTVEVLEDK-------FSSLTLD 55

  Fly   104 VSQINLTTLNMGDGTLDKNVIILRGVRLPRKPVFVLYLKDKIK-------------KGSECLLDI 155
            ...:.::.:: .:|...|               |.|..|.|.|             :|...:::|
Zfish    56 SKDLKISKVS-ANGQAAK---------------FELGAKHKFKGSPLEITLPFELSRGQHVIVEI 104

  Fly   156 YFQGNISETEEGLFRSYYTNSGNDGEE-IYLATNLKPNNARRLFPCFDEPGIKVPFNVSIARPKG 219
            .::  .|.|...|  .:.|.....|:: .||.:..:..:.|.:.||.|.|.:|..:...::.|:.
Zfish   105 EYE--TSPTATAL--QWLTPKQTAGKKHPYLFSQCQATHCRTMVPCQDTPSVKHTYYAQVSVPRE 165

  Fly   220 YITLFNTPLHNTINHPKLRSYSLDFFHTTAPMSTHAFGFVILKLHMWNEHKIVKSSDI-PAINIW 283
            .:.|.:.........|...|..:..|....||.::....|:..|         :|.:| |...:|
Zfish   166 LVALMSALRDGQEPDPSDSSRVIYRFRQPVPMPSYLIAIVVGAL---------ESREIGPRSRVW 221

  Fly   284 SN----NLSSTNLLDIQNKLNVAHTTIQHFFNIPLPLTKLDVIAIP--------SLATLPFISAS 336
            |.    :.::....:.:..|..|.:...     |....:.||:.:|        ....|.|::.:
Zfish   222 SEKEYVDEAAYEFAETETMLKTAESLAG-----PYVWGQYDVLVLPPSFPYGGMENPCLTFVTPT 281

  Fly   337 GILIARESEILKKDVFEISRELIYQWIGIWITPEWWTDANVNKALISFIASEIVFEING------ 395
              ::|.:..:    ...|:.|:.:.|.|..:|...|....:|:....:|...|...:.|      
Zfish   282 --VLAGDRSL----AGVIAHEISHSWTGNLVTNRTWEHFWLNEGHTVYIERMIARCMEGEQLRQF 340

  Fly   396 -GI-----------EFNGKYPMTILYSLYYELSKRYPNSHITGIKHEFASIKVQ----LIIRMLS 444
             ||           :|.....:|.|          .||.|.......|:|:..:    |:..:..
Zfish   341 KGIGGWKELHESVKQFGANNVLTNL----------VPNLHEVDTDEAFSSVPYEKGFALLYHLEE 395

  Fly   445 LTVGKYTFRLGIQSFI-------------CDYKFKTYKSS-DF-----WNA-------------- 476
            |..|...|...::|:|             .:|.|..:|.. |.     |||              
Zfish   396 LMGGPEVFMGFVKSYIQLFAYGSVTTEEWKNYLFTYFKDKVDILNKVDWNAWMHTPGMAPVRPQY 460

  Fly   477 ITTQAKADNSLDSDLSILSIAESWLEHSRLPLVTI----IRDYDSETAIVQQKVYLRE------- 530
            .||.|.|..||         .:.|::.....|.:.    ::..:|...|....:.|:|       
Zfish   461 DTTMADACTSL---------CQKWVKAKEADLASFTEADVKQLNSPQLIEFMALLLQEDPLPLSH 516

  Fly   531 --------RLHDVPDQDNMLWWIPIALKRQ 552
                    :|:::.:.:....|:.|.:|.|
Zfish   517 VKKMGEVYKLNNIKNAEVRFRWLRICVKAQ 546

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG40470NP_001036635.1 GluZincin 60..503 CDD:301352 93/524 (18%)
ERAP1_C 584..906 CDD:288671
lta4hNP_998451.1 leuko_A4_hydro 18..607 CDD:274120 104/599 (17%)
M1_LTA4H 18..449 CDD:189006 87/491 (18%)
Leuk-A4-hydro_C 467..606 CDD:286244 14/89 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0308
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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