DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG41099 and Lrrk1

DIOPT Version :9

Sequence 1:NP_001015359.1 Gene:CG41099 / 3355072 FlyBaseID:FBgn0039955 Length:1124 Species:Drosophila melanogaster
Sequence 2:XP_006540901.1 Gene:Lrrk1 / 233328 MGIID:2142227 Length:2015 Species:Mus musculus


Alignment Length:572 Identity:118/572 - (20%)
Similarity:187/572 - (32%) Gaps:231/572 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   236 EDVVSLCIQKYGNSLVNTFSENGILPLEMALSSKNAKIAKSLVDNGMANINAVNMEGFSLLKSAL 300
            ||:.|......|:|.|...|...|   ..|...:|...|:.|: .|:...:..:.|...||..|.
Mouse    36 EDMGSKLSLPGGSSTVQCPSMEEI---HTAYKQRNLSRARDLL-RGVCEESESSQEKGQLLSIAA 96

  Fly   301 KNGDAFSANFLLDQNCLLDLPSKPSSDTALHIICNYGPDNTPEIMEVVKKIL---------QRQL 356
            .:||..:..|||.:. .::||::|:.|....:..::|.      .|||:::|         ||.|
Mouse    97 AHGDLETVQFLLTEK-RVELPTEPTDDNPAVVAAHFGH------AEVVRELLESLPGPCTPQRLL 154

  Fly   357 NINIQNIKGETPLHIAIARRNVEMVKLL-----------------------------LKVPNIDI 392
            |         ..|.:|..|.::|:||||                             :|..|.||
Mouse   155 N---------WMLALACQRGHLEVVKLLVLTHGADPENYAVRKNEFPVIVRLPLYAAIKAGNEDI 210

  Fly   393 NL------------------------------------RTYDEKCAL-----ELSLSMGDHEFLI 416
            .:                                    .:|..|.||     .|.|...|.::|:
Mouse   211 AIFLLRHGAYFCSYILLDSPEPSKHLLRKYFIEASALPSSYPGKIALRVKWSHLKLPWVDLDWLL 275

  Fly   417 ------------ASILLSMGA----------RTDRTNSKTGD----------------------- 436
                        |:.|.|:.:          :.:.:|::.|:                       
Mouse   276 DISCQITELDLSANCLPSLPSIIPWGLINLKKLNLSNNQLGELPCVQSSDEIICSRLLEIDISSN 340

  Fly   437 ------------SLLQVFA-----LDRHRGEKSA---IFLADFADLDHINFRGLTALHIAALNNM 481
                        |.||...     |:|...|::|   |.|....:||..:.| ||.|.:..:::.
Mouse   341 KLSHLPPGFLHLSKLQKLTASKNYLERLFEEENATNWIGLRKLQELDLADNR-LTELPVQFMHSF 404

  Fly   482 PNLVKKLIVNGASSNLKHI----DCGLKSALHIAVEANAIDALEAFVELKNKSH--DIDFNCQD- 539
            .:|..   :|.:.:|||..    .|.||..   ....||:::|...:.:..|||  |.||:... 
Mouse   405 KSLTS---LNVSRNNLKSFPDPWSCPLKCC---KASKNALESLPDKMAVFWKSHLRDADFSENSL 463

  Fly   540 -----------------INGDSPLSL-------CLSLKRTTLVPTLIRGGSDVNGKNKNNLSPLH 580
                             :.|:..|||       |..||...|              ::|.|.   
Mouse   464 KEVPLGLFQLDALMFLRLQGNQLLSLPPQEKWTCTQLKTLDL--------------SRNQLG--- 511

  Fly   581 QSIKNED----SDISLFLLEQGADITALTENLDSALDLSIKHDLSEVVDALC 628
               ||||    ..|||| ..:|..    ....::|..|.....|||.::.||
Mouse   512 ---KNEDGLKTKRISLF-TTRGRQ----RSGTETASMLEFPAFLSESLEVLC 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG41099NP_001015359.1 BTB 67..164 CDD:279045
BTB 75..166 CDD:197585
ANK 252..385 CDD:238125 37/170 (22%)
ANK repeat 291..322 CDD:293786 10/30 (33%)
ANK repeat 325..362 CDD:293786 10/45 (22%)
Ank_2 330..431 CDD:289560 32/201 (16%)
ANK 463..595 CDD:238125 40/166 (24%)
ANK repeat 468..501 CDD:293786 9/36 (25%)
Ank_2 473..572 CDD:289560 26/129 (20%)
ANK repeat 503..539 CDD:293786 11/37 (30%)
ANK 536..660 CDD:238125 26/122 (21%)
ANK repeat 541..572 CDD:293786 8/37 (22%)
ANK repeat 574..637 CDD:293786 18/59 (31%)
Ank_2 579..670 CDD:289560 16/54 (30%)
ANK repeat 639..670 CDD:293786
Ank_2 644..752 CDD:289560
ANK repeat 672..721 CDD:293786
ANK 721..843 CDD:238125
ANK repeat 723..752 CDD:293786
ANKYR 752..977 CDD:223738
ANK repeat 754..786 CDD:293786
ANK 820..944 CDD:238125
ANK repeat 822..855 CDD:293786
ANK repeat 857..888 CDD:293786
ANK 885..1017 CDD:238125
ANK repeat 890..921 CDD:293786
ANK repeat 923..955 CDD:293786
ANK repeat 996..1021 CDD:293786
FYVE_ANFY1 1054..1116 CDD:277267
Lrrk1XP_006540901.1 Ank_2 59..143 CDD:372319 24/94 (26%)
ANK repeat 92..120 CDD:293786 9/28 (32%)
Ank_2 127..219 CDD:372319 21/106 (20%)
ANK repeat 149..187 CDD:293786 12/46 (26%)
ANK repeat 189..219 CDD:293786 4/29 (14%)
LRR <280..514 CDD:227223 48/260 (18%)
leucine-rich repeat 282..304 CDD:275380 3/21 (14%)
leucine-rich repeat 305..331 CDD:275380 2/25 (8%)
leucine-rich repeat 332..382 CDD:275380 9/49 (18%)
leucine-rich repeat 355..378 CDD:275380 6/22 (27%)
leucine-rich repeat 383..406 CDD:275380 6/23 (26%)
leucine-rich repeat 407..452 CDD:275380 12/50 (24%)
leucine-rich repeat 453..475 CDD:275380 3/21 (14%)
leucine-rich repeat 476..499 CDD:275380 5/22 (23%)
leucine-rich repeat 500..550 CDD:275380 18/74 (24%)
leucine-rich repeat 551..573 CDD:275380 2/5 (40%)
P-loop_NTPase 640..822 CDD:393306
COR 845..1037 CDD:379765
STKc_LRRK1 1249..1524 CDD:270969
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0192
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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