DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF4B and RNA15

DIOPT Version :10

Sequence 1:NP_001015319.1 Gene:eIF4B / 3355041 FlyBaseID:FBgn0020660 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_011471.1 Gene:RNA15 / 852838 SGDID:S000003012 Length:296 Species:Saccharomyces cerevisiae


Alignment Length:218 Identity:50/218 - (22%)
Similarity:102/218 - (46%) Gaps:34/218 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 NSIPHKAPFIAYINNLPFDANEDDLYEFFEGIN-LISLRLPREDGENGRSRGFGYVELENREDLI 135
            |:.|.:   :.|:.::|:|..|:.:.:....:. :|:|:: ..|.:.|||:|:.::|..:.|...
Yeast    13 NNPPSR---VVYLGSIPYDQTEEQILDLCSNVGPVINLKM-MFDPQTGRSKGYAFIEFRDLESSA 73

  Fly   136 H-VLSLPDPSIKGRRIRIELSNEND-----QQSRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGS 194
            . |.:|....:..|.::...|:.:|     ||.:|:.|.......|||:|.::.| ..|.||:| 
Yeast    74 SAVRNLNGYQLGSRFLKCGYSSNSDISGVSQQQQQQYNNINGNNNNNGNNNNNSN-GPDFQNSG- 136

  Fly   195 NFGYSSNFERSFNRERKSLPDRDDVNTPGSWRTSARPQSID-TSPTRREVEQVSEKYREGRVKIA 258
                ::||   .:::...||...|||             |: |:|......::::|.:|.::|..
Yeast   137 ----NANF---LSQKFPELPSGIDVN-------------INMTTPAMMISSELAKKPKEVQLKFL 181

  Fly   259 DRYSREETSKVEEERPKLNLKPR 281
            .::.....:..|:....|.|.|:
Yeast   182 QKFQEWTRAHPEDAVSLLELCPQ 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4BNP_001015319.1 RRM_eIF4B 78..159 CDD:409836 17/82 (21%)
RNA15NP_011471.1 RRM_CSTF2_RNA15_like 18..94 CDD:409832 16/79 (20%)
CSTF_C 255..291 CDD:464130
Blue background indicates that the domain is not in the aligned region.

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