DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment eIF4B and eif4ba

DIOPT Version :10

Sequence 1:NP_001015319.1 Gene:eIF4B / 3355041 FlyBaseID:FBgn0020660 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_001092707.3 Gene:eif4ba / 553214 ZFINID:ZDB-GENE-060629-1 Length:616 Species:Danio rerio


Alignment Length:506 Identity:142/506 - (28%)
Similarity:229/506 - (45%) Gaps:121/506 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASAGKKGKKNKGTVISLQSFLCN--------SDAPVGTTQVSKKIRNLDGD-----DSDDGSGT 52
            ||::.||.|| ||..::|..||..        |.||...|..:.:..:|:||     .::|....
Zfish     1 MAASAKKNKK-KGKTLTLTDFLAEDSGGNAPPSYAPPKPTSWADETDDLEGDVTTSWHTEDEVYR 64

  Fly    53 LPLVYQ--LPTAPRANR--IFDDNSIPHKAPFIAYINNLPFDANEDDLYEFFEGINLISLRLPRE 113
            .|.:.:  |||||||.|  ..|.:.:|...|:.|::.|||:|..||.:..||.|:::.::|||||
Zfish    65 APPIDRSILPTAPRAAREPNVDRSRLPRSPPYTAFLGNLPYDVTEDSIKNFFRGLSISAVRLPRE 129

  Fly   114 DGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRIRIELSNENDQQSRQKSNRRFDGFGNNGD 178
            .....|.:||||.|.::.|.|:..|||.:.::..||||:::::::::  :::.:|...|...|..
Zfish   130 PSNPERLKGFGYAEFDDVESLLQALSLNEENLGNRRIRVDIADQSNE--KERDDRSVSGRDRNRS 192

  Fly   179 NRDSG------NWR------------------------------RDSQ---NNGSNFGYSSNFER 204
            :||.|      :||                              |:.|   |:..:.|.....||
Zfish   193 DRDMGPDKTDSDWRARPKSEADDGPRRDDAFAERSKDRYDSDRHREGQRWDNDRYDGGRDRYRER 257

  Fly   205 SFNRERKSLPDRDDVNTPGSWRTSARPQSIDTSPTRREVEQVSEKYREGRVKIADRY-SREETSK 268
            ..:|||:......|..:.|     .||..   |..||:.:...:.:|..    .||| .|||..:
Zfish   258 YDDRERRDYDRGFDSRSGG-----RRPFG---SGFRRDYDDRRDDFRGS----GDRYGEREERFE 310

  Fly   269 VEEE---------RPKLNLKPRTLPLPDVKTIEFEKCDVDEFNLDKQGGTSS----LNVFGSAKP 320
            ..:|         |||||||||::|..:..:               :|.::|    .::||.|||
Zfish   311 RRDERRDDRGPPQRPKLNLKPRSVPKDEEPS---------------RGPSASSGRAASIFGGAKP 360

  Fly   321 VDTAARELEIEQRLALARKQDKGRREQGLNEKLAELQVDKN---DNESLSATVSWRT-------N 375
            |||||:|.|:|:|  |.::||:.:|         :|:.|||   :.:......|||:       :
Zfish   361 VDTAAKEREVEER--LKKEQDRLQR---------QLEEDKNRGPERKPRERHPSWRSEDQGTERS 414

  Fly   376 QDYKESDKINKCPGEKQRDEEIHRLNHARGQFNRPELLREKPNANGESKRD 426
            :...||.:....|...||..|..|........:|.|.|....:.:..||::
Zfish   415 RTGSESSQTGNPPSRGQRRRESERSVENEVFSSRDEELSSHGSQSPASKQE 465

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4BNP_001015319.1 RRM_eIF4B 78..159 CDD:409836 31/80 (39%)
eif4baNP_001092707.3 None

Return to query results.
Submit another query.