DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF4B and Hrb98DE

DIOPT Version :10

Sequence 1:NP_001015319.1 Gene:eIF4B / 3355041 FlyBaseID:FBgn0020660 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_524543.1 Gene:Hrb98DE / 43385 FlyBaseID:FBgn0001215 Length:365 Species:Drosophila melanogaster


Alignment Length:133 Identity:35/133 - (26%)
Similarity:63/133 - (47%) Gaps:14/133 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 YINNLPFDANEDDLYEFFEGI-NLISLRLPREDGENGRSRGFGYVELENREDLIHVLSLPDPSIK 146
            ::..|..|.:|..:.::|:.. |::.:.:. .|.|.|:.|||.:||.::.:.:..|:......:.
  Fly   125 FVGALKDDHDEQSIRDYFQHFGNIVDINIV-IDKETGKKRGFAFVEFDDYDPVDKVVLQKQHQLN 188

  Fly   147 GRRIRIE--LSNENDQQ----------SRQKSNRRFDGFGNNGDNRDSGNWRRDSQNNGSNFGYS 199
            |:.:.::  |..:||||          .|...||...|.||.|:....|||.....|.|:|.|.:
  Fly   189 GKMVDVKKALPKQNDQQGGGGGRGGPGGRAGGNRGNMGGGNYGNQNGGGNWNNGGNNWGNNRGGN 253

  Fly   200 SNF 202
            .|:
  Fly   254 DNW 256

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4BNP_001015319.1 RRM_eIF4B 78..159 CDD:409836 16/78 (21%)
Hrb98DENP_524543.1 RRM1_hnRNPA_like 32..109 CDD:409992
RRM_SF 123..195 CDD:473069 15/70 (21%)
Blue background indicates that the domain is not in the aligned region.

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