DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF4B and Eif4b

DIOPT Version :9

Sequence 1:NP_001015319.1 Gene:eIF4B / 3355041 FlyBaseID:FBgn0020660 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_001008325.1 Gene:Eif4b / 300253 RGDID:1306479 Length:611 Species:Rattus norvegicus


Alignment Length:536 Identity:150/536 - (27%)
Similarity:224/536 - (41%) Gaps:134/536 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MASAGKKGKKNKGTVISLQSFLC-NSDAPVGTTQVSKKIR------NLDGD------DSDDGSGT 52
            ||::.|| |..||..|||..||. :.....|:|.|.|.:.      :|:||      .:||....
  Rat     1 MAASAKK-KNKKGKTISLTDFLAEDGGTGGGSTYVPKPVSWADETDDLEGDVSTTWHSNDDDVYR 64

  Fly    53 LPLVYQ--LPTAPRANR--IFDDNSIPHKAPFIAYINNLPFDANEDDLYEFFEGINLISLRLPRE 113
            .|.:.:  |||||||.|  ..|.:.:|...|:.|::.|||:|..||.:.:||.|:|:.::|||||
  Rat    65 APPIDRSILPTAPRAAREPNIDRSRLPKSPPYTAFLGNLPYDVTEDSIKDFFRGLNISAVRLPRE 129

  Fly   114 DGENGRSRGFGYVELENREDLIHVLSLPDPSIKGRRIRIELSNENDQQSRQKSNRRFDGFGNNGD 178
            .....|.:||||.|.|:.:.|:..|||.:.|:..||||::::::  .|.:.:.:|.|....|...
  Rat   130 PSNPDRLKGFGYAEFEDLDSLLSALSLNEESLGNRRIRVDVADQ--AQDKDRDDRSFGRDRNRDS 192

  Fly   179 NRDSGNW--------------RRDSQNNGSNF-----------GYSSNFERSFNRERKSLPDRDD 218
            ::...:|              ||...:.|..:           ||...:.....|:......||.
  Rat   193 DKTDTDWRARPATDSFDDYPPRRGDDSFGDKYRDRYESDRYRDGYRDGYRDGPRRDMDRYGGRDR 257

  Fly   219 VNTPGSWRTSARPQSIDTSPTRREV---EQVSEKYREGRVKIADRY---------SREETSKVE- 270
            .:..|| |...|.........||..   .:..:.||.|..:..|||         ||::.|:.: 
  Rat   258 YDDRGS-RDYDRGYDSRIGSGRRAFGSGYRRDDDYRGGGDRYEDRYDRRDDRSWSSRDDYSRDDY 321

  Fly   271 -------EERPKLNLKPRTLPLPDVKTIEFEKCDVDEFNLDKQGGTS----SLNVFGSAKPVDTA 324
                   .:|||||||||:.|..|                |....||    :.::||.|||||||
  Rat   322 RRDDRGPPQRPKLNLKPRSTPKED----------------DSSASTSQSSRAASIFGGAKPVDTA 370

  Fly   325 ARELEIEQRLALARKQDKGRREQGLNEKLAELQVDKNDNESLSATVSWRTNQDYKESDKINKCPG 389
            |||.|:|:|  |.::|:|      |..:|.|.::|:...|   ...|||:               
  Rat   371 AREREVEER--LQKEQEK------LQRQLDEPKLDRRPRE---RHPSWRS--------------- 409

  Fly   390 EKQRDEEIHRLNHARGQ----------FNRPELLREKPNANGESKRDCRNDRSVSKKTSQ----- 439
            |:.::.|..|......|          ..|.|..:...|.....:.||.:..|...|..|     
  Rat   410 EETQERERSRTGSESSQTGTSATSGRNTRRRESEKSLENETLNKEEDCHSPTSKPPKPDQPLKVM 474

  Fly   440 -------NDLVLQSSN 448
                   |..|.:|||
  Rat   475 PAPPPKENAWVKRSSN 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF4BNP_001015319.1 RRM <72..268 CDD:223796 61/232 (26%)
RRM_eIF4B 79..155 CDD:240848 33/75 (44%)
Eif4bNP_001008325.1 RRM <83..>190 CDD:223796 38/108 (35%)
RRM_eIF4B 95..171 CDD:240848 33/75 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166353080
Domainoid 1 1.000 72 1.000 Domainoid score I9145
eggNOG 1 0.900 - - E33208_3BDSB
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 151 1.000 Inparanoid score I4281
OMA 1 1.010 - - QHG58965
OrthoDB 1 1.010 - - D1530583at2759
OrthoFinder 1 1.000 - - FOG0007285
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105219
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.670

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