DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gprk1 and grk1

DIOPT Version :9

Sequence 1:NP_001036438.1 Gene:Gprk1 / 3355013 FlyBaseID:FBgn0260798 Length:700 Species:Drosophila melanogaster
Sequence 2:XP_002937018.3 Gene:grk1 / 100486335 XenbaseID:XB-GENE-1012638 Length:559 Species:Xenopus tropicalis


Alignment Length:563 Identity:198/563 - (35%)
Similarity:303/563 - (53%) Gaps:49/563 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LEAVLADVSYLMAMEK--SKCTPAARASKK----LNLPDPSVRSVMYKYLEKEGELNFHKI-FNE 61
            ||.|:|:.:|:.|...  ....|....:||    |.||..|    ..::|:.:.:|.|..| ..:
 Frog     6 LETVVANSAYITARGSFDGGFNPQITRNKKYRARLKLPPLS----ECEHLKDKLDLQFENICVKQ 66

  Fly    62 VLGYLLFKDFCENDSEEPIQQLKFFEQIKLFEKTECYD-----ERKKMARDIYDNFIMEEMLSHT 121
            .:|..||::|.|:        .:|...::::...|.||     :|...||.|.:.::..:.....
 Frog    67 PIGKKLFQEFLES--------AEFTHIVEIWNDIEDYDVAEDEDRLYKARGIINKYLDSDSKQFC 123

  Fly   122 YEYSKHAVASVQKYLLKNEVPVDLFEPYLEEIFTQLKGKPFKKFLESDKFTRFCQWKNLELNIQL 186
            :...:.|:..|.:..  |:|...||:...:.....||...|.::.||..|::|.|||.||  .|.
 Frog   124 HYLDEKAIIKVVQDC--NKVSNMLFKQLHKSTLDYLKENAFAQYKESKYFSKFLQWKKLE--AQP 184

  Fly   187 TMND-FSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGEMLALNERNMLQAVSTGI 250
            ..:| |...||:|:||||||...:...||||||.|.|.|||:|.::|...|:.|:.:|..|.:  
 Frog   185 IGDDWFMDFRILGKGGFGEVSATQMRATGKMYACKKLSKKRLKKRKGFEGAMVEKRILAKVHS-- 247

  Fly   251 DCPFIVCMTYAFHTPDKLCFILDLMNGGDLHYHL-----SQHGIFSEDEMKFYAAEVILGLEHMH 310
              .|||.:.|||.|.:.:|.::.:||||||.:|:     ...|| .|....||.|::|.||||:|
 Frog   248 --RFIVSLAYAFQTKNDVCLVMTIMNGGDLRFHIYNMDEENPGI-DEHRASFYTAQIISGLEHLH 309

  Fly   311 KRCIVYRDLKPANILLDENGHIRISDLGLACDFSKKKPHAS--VGTHGYMAPEVLSKGTSYDSCA 373
            :..|:||||||.|:|||.:|::||||||||.:..:||..|.  .||.|:||||:| :|..||...
 Frog   310 QNRIIYRDLKPENVLLDNDGNVRISDLGLAVELKEKKSKAKGYAGTPGFMAPELL-QGEEYDYAV 373

  Fly   374 DWFSFGCMLYKLLKGHSPF--RQHKTKDKLEIDKMTLTMNVELPESFSLELKNLLEMLLQRDVSK 436
            |:||.|..||:::....||  |..|.::| |:....|..:|.....|||:.|::.|.||.:|..|
 Frog   374 DYFSLGVTLYEMIAARGPFRCRGEKVENK-ELKNRILNDSVTYSGKFSLDCKSICEALLDKDPKK 437

  Fly   437 RLGCMGNGADEVKMHNFFCGIDWHQVYIQKYTPPLVPPRGEVNAADAFDIGSFDEEDTKGIKLND 501
            |:|......:|:::|.||.||:|.::......||..|....|.|.|..|:|:|  ...||:.|::
 Frog   438 RMGFKNGNCNEIRVHLFFRGINWRKLEAGILPPPFAPDSRIVYAKDIQDVGAF--STVKGVTLDE 500

  Fly   502 ADQDLYKMF-SLTISERWQQEVSET-VFDTVNTETDKLEQKRK 542
            :|..|:..| |..||..||:|:.|| :||.:|:|.::...:|:
 Frog   501 SDNKLFDEFASGNISIPWQEEMVETGIFDEINSELNENNVRRE 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gprk1NP_001036438.1 RGS_GRK2_GRK3 30..186 CDD:188701 41/165 (25%)
PKc_like 185..531 CDD:304357 147/357 (41%)
Pkinase 191..454 CDD:278497 115/271 (42%)
PH_GRK2_subgroup 552..675 CDD:269946
PH 559..657 CDD:278594
grk1XP_002937018.3 RGS_GRK1 43..178 CDD:188702 33/148 (22%)
STKc_GRK1 188..475 CDD:270759 123/293 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1104340at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

Return to query results.
Submit another query.