Protein Alignment su(f) and Cstf3

DIOPT Version :9

• Sequence 1: NP_001015241.3
• Gene: su(f) / 3354994
• FlyBaseID: FBgn0003559
• Length: 765
• Species: Drosophila melanogaster
• Sequence 2: NP_001071140.1
• Gene: Cstf3 / 362178
• RGDID: 1305901
• Length: 590
• Species: Rattus norvegicus
• Alignment Length: 569
• Identity: 350/569 - (61%)
• Similarity: 453/569 - (79%)
• Gaps: 34/569 - (5%)

  Fly    13 EWGMERLVRAQQVVELRPYDIESWSVMIREAQTRPIHEVRSLYESLVNVFPTTARYWKLYIEMEM 77
            |:..|::.:|::.:|..|||:::||::|||||.:||.:.|..||.||..||::.|:||||||.|:
  Rat    12 EYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI 76

  Fly    78 RSRYYERVEKLFQRCLVKILNIDLWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHSFS 142
            :::.|::|||||||||:|:|:|||||.||:||:|||..|.::||||||||||||:||||::.|:.
  Rat    77 KAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 141

  Fly   143 IWQDYIYFLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEKMS 207
            ||.|||.||:||||||:|||||:|||||||||:..|.|::.|||||:||..:|:.||..:::||.
  Rat   142 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI 206

  Fly   208 LERSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYEKSNPLRTEDTAL 272
            .:||:|||||||||||.|...|||:||.|:|||..|.:|.:||::||::|.:||||||||||..|
  Rat   207 EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 271

  Fly   273 VTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLTEKGVRTSVENISPILCVPVVNQIEWVM 337
            :|:|||||.|||||||.|||.:|::|:|:|:.|:::|.|||
  Rat   272 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG------------------------ 312

  Fly   338 AFAWWWAKDVQAAKIFADECANILERSINGVLNRNALLYFAYADFEEGRLKYEKVHTMYNKLLQL 402
                    |:..||:|:||.|||.||:|:.:|.:|.||||||||:||.|:||||||::||:||.:
  Rat   313 --------DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 369

  Fly   403 PDIDPTLVYVQYMKFARRAEGIKSARSIFKKAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFE 467
            .||||||||:||||||||||||||.|.||||||||.|:|:|::|.||||||||||||.:||:|||
  Rat   370 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 434

  Fly   468 LGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLS 532
            ||||::|..||||:.||||||||||||||||||||||:||.|.|.||.|:|.|||.||||||||:
  Rat   435 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 499

  Fly   533 SIVKVERRRSAVFENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGY 581
            ||:|||:||...|.  :||||||||.|||||||:|||||:::|||::||
  Rat   500 SILKVEKRRFTAFR--EEYEGKETALLVDRYKFMDLYPCSASELKALGY 546

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
su(f)	NP_001015241.3	RNA14	19..550	CDD:227438	323/530 (61%)
		HAT	48..78	CDD:214642	16/29 (55%)
		Suf	408..682	CDD:283497	131/174 (75%)
Cstf3	NP_001071140.1	RNA14	2..532	CDD:227438	340/553 (61%)
		HAT	45..77	CDD:214642	17/31 (55%)
		Suf	375..>548	CDD:283497	131/174 (75%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	364	1.000	Domainoid score	I910
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H1014
Inparanoid	1	1.050	723	1.000	Inparanoid score	I596
OMA	1	1.010	-	-		QHG57539
OrthoDB	1	1.010	-	-		D217087at33208
OrthoFinder	1	1.000	-	-		FOG0001614
OrthoInspector	1	1.000	-	-		oto95724
orthoMCL	1	0.900	-	-		OOG6_102277
Panther	1	1.100	-	-	LDO	PTHR19980
Phylome	1	0.910	-	-
SonicParanoid	1	1.000	-	-		X1181
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	13	12.980