DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment su(f) and Cstf3

DIOPT Version :9

Sequence 1:NP_001015241.3 Gene:su(f) / 3354994 FlyBaseID:FBgn0003559 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_663504.1 Gene:Cstf3 / 228410 MGIID:1351825 Length:717 Species:Mus musculus


Alignment Length:769 Identity:420/769 - (54%)
Similarity:542/769 - (70%) Gaps:86/769 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EWGMERLVRAQQVVELRPYDIESWSVMIREAQTRPIHEVRSLYESLVNVFPTTARYWKLYIEMEM 77
            |:..|::.:|::.:|..|||:::||::|||||.:||.:.|..||.||..||::.|:||||||.|:
Mouse    12 EYVPEKVKKAEKKLEENPYDLDAWSILIREAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEI 76

  Fly    78 RSRYYERVEKLFQRCLVKILNIDLWKLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHSFS 142
            :::.|::|||||||||:|:|:|||||.||:||:|||..|.::||||||||||||:||||::.|:.
Mouse    77 KAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 141

  Fly   143 IWQDYIYFLRGVEAVGNYAENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEKMS 207
            ||.|||.||:||||||:|||||:|||||||||:..|.|::.|||||:||..:|:.||..:::||.
Mouse   142 IWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMI 206

  Fly   208 LERSKDYMNARRVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYEKSNPLRTEDTAL 272
            .:||:|||||||||||.|...|||:||.|:|||..|.:|.:||::||::|.:||||||||||..|
Mouse   207 EDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTL 271

  Fly   273 VTRRVMFATEQCLLVLTHHPAVWHQASQFLDTSARVLTEKGVRTSVENISPILCVPVVNQIEWVM 337
            :|:|||||.|||||||.|||.:|::|:|:|:.|:::|.|||                        
Mouse   272 ITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKG------------------------ 312

  Fly   338 AFAWWWAKDVQAAKIFADECANILERSINGVLNRNALLYFAYADFEEGRLKYEKVHTMYNKLLQL 402
                    |:..||:|:||.|||.||:|:.:|.:|.||||||||:||.|:||||||::||:||.:
Mouse   313 --------DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI 369

  Fly   403 PDIDPTLVYVQYMKFARRAEGIKSARSIFKKAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFE 467
            .||||||||:||||||||||||||.|.||||||||.|:|:|::|.||||||||||||.:||:|||
Mouse   370 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFE 434

  Fly   468 LGLKRFGGSPEYVMCYIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLS 532
            ||||::|..||||:.||||||||||||||||||||||:||.|.|.||.|:|.|||.||||||||:
Mouse   435 LGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 499

  Fly   533 SIVKVERRRSAVFENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGY-----AENVGIILNKV 592
            ||:|||:||...|.  :||||||||.|||||||:|||||:::|||::||     |:...||.:.|
Mouse   500 SILKVEKRRFTAFR--EEYEGKETALLVDRYKFMDLYPCSASELKALGYKDVSRAKLAAIIPDPV 562

  Fly   593 GGGAQSQNTGEVETDSEATPPLPRPDFSQMIPFKPRPCAHPGAHPLAGGVFPQPPALAALCATLP 657
               ........::.:.:..|..|:||..|||||:||..|.||.||:.|||||.|||...|...||
Mouse   563 ---VAPSIVPVLKDEVDRKPEYPKPDTQQMIPFQPRHLAPPGLHPVPGGVFPVPPAAVVLMKLLP 624

  Fly   658 PPNSFRGPFVSVELLFDIFMRLNLPDS---------------APQPNGDNELSPKIFDLAKSVHW 707
            ||..|:||||.|:.|.:||.|..:|::               |.:.||..|.|..   |.|:|  
Mouse   625 PPICFQGPFVQVDELMEIFRRCKIPNTVEEAVRIITGGAPELAVEGNGPVESSAV---LTKAV-- 684

  Fly   708 IVDTSTYTGVQHSVTAVPPRRRRLLPGGD-DSDDELQTAVPPSHDIYRLRQLKR 760
                                 :|  |..| |.|:|....|||.|||||.||.||
Mouse   685 ---------------------KR--PNEDSDEDEEKGAVVPPVHDIYRARQQKR 715

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
su(f)NP_001015241.3 RNA14 19..550 CDD:227438 323/530 (61%)
HAT 48..78 CDD:214642 16/29 (55%)
Suf 408..682 CDD:283497 174/278 (63%)
Cstf3NP_663504.1 RNA14 2..532 CDD:227438 340/553 (61%)
TPR repeat 31..60 CDD:276809 15/28 (54%)
HAT 1 45..77 17/31 (55%)
TPR repeat 65..92 CDD:276809 16/26 (62%)
HAT 2 79..110 21/30 (70%)
HAT 3 117..152 24/34 (71%)
HAT 4 163..196 20/32 (63%)
HAT 5 221..261 20/39 (51%)
HAT 6 271..303 21/31 (68%)
HAT 7 319..352 20/32 (63%)
HAT 8 354..387 24/32 (75%)
Suf 375..649 CDD:310439 174/278 (63%)
HAT 9 458..494 27/35 (77%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 683..704 9/45 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167839772
Domainoid 1 1.000 461 1.000 Domainoid score I480
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H1014
Inparanoid 1 1.050 821 1.000 Inparanoid score I469
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57539
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001614
OrthoInspector 1 1.000 - - oto92156
orthoMCL 1 0.900 - - OOG6_102277
Panther 1 1.100 - - LDO PTHR19980
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1162
SonicParanoid 1 1.000 - - X1181
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.930

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