DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment zyd and slc24a1

DIOPT Version :9

Sequence 1:NP_001015261.3 Gene:zyd / 3354992 FlyBaseID:FBgn0265767 Length:542 Species:Drosophila melanogaster
Sequence 2:XP_017947991.2 Gene:slc24a1 / 100488363 XenbaseID:XB-GENE-991430 Length:729 Species:Xenopus tropicalis


Alignment Length:610 Identity:196/610 - (32%)
Similarity:298/610 - (48%) Gaps:124/610 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 TQP----AIDDFPRDLFSEAQRQSGAVVLHVIASLYLFVALAVVCDEYFVPAVEKICAALNMSND 83
            |:|    |..::|.||||..:|:.|.|.||:...:|:|||||:||||:||||:..|...|.:|.|
 Frog   129 TKPPLPHAKGEYPEDLFSIEERRRGWVSLHIFGMMYVFVALAIVCDEFFVPALGVITEKLQISED 193

  Fly    84 VAGATFMAAATSAPELFVNVIGTFITEGDIGVGTIVGSAVFNILAVAACCGIGAGMTIPLDWWPL 148
            |||||||||..||||||.::||.||:..::|:||||||||||||.|...|.:.:...:.|.||||
 Frog   194 VAGATFMAAGGSAPELFTSLIGVFISHSNVGIGTIVGSAVFNILFVIGTCALFSREILNLTWWPL 258

  Fly   149 TRDSIAYGVTVAILICVMHDERVEWYEALILVSLYAVYLAVMYFDKTFQKCAKGGVKQAR----- 208
            .||...|.:.:.:||....|..::|:|:::|:..|.:|:..|..:...::..||.:.:.|     
 Frog   259 FRDVSFYILDLIMLIIFFLDNVIQWWESMLLLLAYGLYVGFMKLNVQVERLVKGQLSKQRRLVKV 323

  Fly   209 -------------------------SRSR--------SSNCSIH--------------------- 219
                                     :|.|        .|:.|:|                     
 Frog   324 MALEDTSKKGNGAVAQDEPKPVEDNNRLRLKPFLTRGGSSASLHNSTMRSTIFQLMIHTLDPLGE 388

  Fly   220 TKNSNEKEPELVEN--------RICQNMANIQL----NGGLNKEQAKATSTSGAGTTAISITTST 272
            ..|.|:..|...||        .|..|:|..::    ..||..:..| ..|....|..:.:|..|
 Frog   389 ASNLNQCRPCYPENGAKFKDKAEIMNNLAKAKVETEAKKGLKAKDDK-DETDVPNTVNVEVTPPT 452

  Fly   273 MT-------------TTLSTTHSAGGGGGAVGLCSGPGAIVQMAPLDDAEAESHVAVAAAD---- 320
            .:             ..:......|||||.....||          |:::.:|....:..|    
 Frog   453 GSEPSGDAEDEVMDKDDIKRGRGEGGGGGDSSGSSG----------DESDDDSDDEDSDDDDDDD 507

  Fly   321 --------EGRKEEGYS---LLSYPKDKSCFAQFTWLIIWPIHLLFRIAIPDCKKAKNNKIFPLT 374
                    ||.:||...   .|.:|:.|.  .|.|:|.:.||.....:.:||.:..|:...|.||
 Frog   508 DDDDDDDGEGEEEEEADEPLSLEWPETKR--KQITYLFLLPIVFPLWLTLPDVRTPKSRNYFVLT 570

  Fly   375 FIMCIVWIGSLSYVVAWMITIIGDTLKIPDSVMGITFLAAGTSVPEAVSSVIVAKRGHGSMGICN 439
            |:..|:||...||::.|....:|:|:.|.:.:||:|.||||||:|:.::|||||::|.|.|.:.:
 Frog   571 FLGSIMWIAVFSYLMVWWAHQVGETIGISEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSS 635

  Fly   440 SIGSNTFDILLCLGVPWLIKAVFFPIQPGQNYVAINSAGLEYSAITLLSTLFLLYLTFS--TNKF 502
            |:|||.|||.:.|.|||.:.:||....|    |.::|.|| :.||.|| .|.||::.||  ..|:
 Frog   636 SVGSNIFDITVGLPVPWFLFSVFNGFSP----VPVSSNGL-FCAIVLL-FLMLLFVIFSIAACKW 694

  Fly   503 KLDKKVGTACLVMYLVFMVFASLIE 527
            |::|.:|....::|.||::.:.::|
 Frog   695 KMNKFLGFTMFILYFVFVIVSVMLE 719

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
zydNP_001015261.3 ECM27 46..522 CDD:223604 184/576 (32%)
Na_Ca_ex 48..192 CDD:279963 70/143 (49%)
Na_Ca_ex 370..525 CDD:279963 65/156 (42%)
slc24a1XP_017947991.2 2A1904 <92..729 CDD:273344 196/610 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.