DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17167 and Slc24a4

DIOPT Version :9

Sequence 1:NP_001015257.2 Gene:CG17167 / 3354991 FlyBaseID:FBgn0039941 Length:522 Species:Drosophila melanogaster
Sequence 2:XP_006240533.1 Gene:Slc24a4 / 314396 RGDID:1305926 Length:622 Species:Rattus norvegicus


Alignment Length:605 Identity:172/605 - (28%)
Similarity:291/605 - (48%) Gaps:120/605 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 CLFFTL--CGSFLTVTQAKAATSNASSFLEVSLRYFDEQLLLDILPRAQCPGEDEGSPM------ 66
            |..|.|  |.|.|..:......|.....|..:.|  :.:|:..|          .|:|:      
  Rat    27 CAVFALVCCASGLFGSLGHKTASAGKHVLPDTWR--NRKLMAPI----------NGTPLAKNCTD 79

  Fly    67 ---DEF-ADLFTVDQLRQGWVVLHVFAAVYFFILLAIICNDYFLPTVECICEDLHLSKDVAAATF 127
               .|| .|||:..:.:.|.|:||:..|:|.|..|||:|:|:|:|::|.|||.||||:|||.|||
  Rat    80 PAIHEFPTDLFSNKERQHGAVLLHILGALYMFYALAIVCDDFFVPSLEKICEKLHLSEDVAGATF 144

  Fly   128 MATATSMPEFFTNTISTLILESDMGLGTIIGSLMFNTLGVAGLAALAIDKPVQLDWWPIARDCFI 192
            ||..:|.||.|.:.|...|...|:|:|||:||.:||.|.:.|:..|...:.|:|.||.:.||...
  Rat   145 MAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGLFAGQVVRLTWWAVCRDSVY 209

  Fly   193 YVFNTIILLVLAWSGSISFTESCIMMGFLILYYLITFNNNKFMPAIRVF---------------- 241
            |..:.|:|:...:...|.:.|..|::...:.|.||...|.|    ::.|                
  Rat   210 YTLSVIVLIAFIYDEEIVWWEGLILIILYVFYILIMKYNMK----MQTFFTTKQKSIANGNPVSN 270

  Fly   242 -IEDRMNCCFSTRYDLTEPPENSAKAQLPLKKDPL------------------SGDGLFVLNL-- 285
             :||..:....:..|.:.|.....|.:.|..|.|:                  :|..:.:.|.  
  Rat   271 ELEDGNDLYDGSFDDPSVPLLGQVKEKPPYGKSPVVMVDEILSSSPPKFTFPEAGLRIMITNKFG 335

  Fly   286 PENTSSMSS------------TANLTRNKHL----------------NDED-------------- 308
            |.....|:|            :||...:|.|                |.||              
  Rat   336 PRTRLRMASRIIINERQRLINSANGVNSKPLQNGRHENMENGNVPVENPEDPQQGQEQQPPPQPP 400

  Fly   309 ----DVADVVPGSIYAYPRDASGWMQFWWIFVFPIKVTLSLLIPHPMK--YRRLYPLSFIMCILC 367
                :..:.|..|.::.| :|.| .:..|:|.:|:...|.:.||:..|  :.:.:.::||...|.
  Rat   401 PPEPESVETVFLSPFSMP-EAKG-DKAKWVFTWPLIFLLCVTIPNCSKPRWEKFFMVTFITATLW 463

  Fly   368 IGGNAYLIVWMLTAFGVAIHVPTIVMGLTFLAAGSTMPEAVSSLISLRNGENGIGVSNSLGANSL 432
            |...:||:||::|..|..:.:|.::||:||||||:::|:.::|||..|.|...:.|||::|:|..
  Rat   464 IAVFSYLMVWLVTIIGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNTIGSNVF 528

  Fly   433 AILLSLGVPWFIKN-CIHYGTGEPQQVGTQGIEYNILILIISTMALFII-LSFSGYRLTKRVGVA 495
            .||:.||:||.::. .|:||:  ..::.::|:.|:: :|::.::||.:: :..:.:||.:::|:.
  Rat   529 DILVGLGIPWGLQTMVINYGS--TVKINSRGLVYSV-VLLLGSVALTVLGIHLNKWRLDRKLGIY 590

  Fly   496 LFTVYGVFIVLQILIEMNVF 515
            :..:|.||:...|:||.|||
  Rat   591 VLVLYAVFLCFSIMIEFNVF 610

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17167NP_001015257.2 TIGR00367 85..503 CDD:273039 144/504 (29%)
Na_Ca_ex 86..229 CDD:279963 60/142 (42%)
Na_Ca_ex 356..509 CDD:279963 50/154 (32%)
Slc24a4XP_006240533.1 TIGR00367 102..598 CDD:273039 144/504 (29%)
Na_Ca_ex 103..245 CDD:279963 59/141 (42%)
Na_Ca_ex 452..604 CDD:279963 50/154 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166338077
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10846
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.950

Return to query results.
Submit another query.