DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG17167 and slc24a4b

DIOPT Version :9

Sequence 1:NP_001015257.2 Gene:CG17167 / 3354991 FlyBaseID:FBgn0039941 Length:522 Species:Drosophila melanogaster
Sequence 2:XP_002665845.2 Gene:slc24a4b / 100334346 ZFINID:ZDB-GENE-081031-75 Length:636 Species:Danio rerio


Alignment Length:496 Identity:157/496 - (31%)
Similarity:262/496 - (52%) Gaps:62/496 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 DLFTVDQLRQGWVVLHVFAAVYFFILLAIICNDYFLPTVECICEDLHLSKDVAAATFMATATSMP 135
            |:||..:.:.|.|:||:.||:|.|:.|||:|:|||:.::|.|||.|:||:|||.|||||..:|.|
Zfish   141 DVFTNAERKSGAVLLHIIAALYMFLALAIVCDDYFVTSLEKICEKLNLSEDVAGATFMAAGSSAP 205

  Fly   136 EFFTNTISTLILESDMGLGTIIGSLMFNTLGVAGLAALAIDKPVQLDWWPIARDCFIYVFNTIIL 200
            |.|.:.|...|...|:|:|||:||.:||.|.:.|:..:...:.|.|.||.:.||.|.|:.:.:.|
Zfish   206 ELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGIFAGQVVLLTWWAVFRDSFFYILSVVAL 270

  Fly   201 LVLAWSGSISFTESCIMMGFLILYYLITFNNNKFMPAIRVF-------------------IEDRM 246
            :|..:...|.:.||.:::.....|.||.    ||...::.|                   :||..
Zfish   271 IVFIYDEKIVWWESLVLVVMYACYILIM----KFNSRLQKFFTRKGNKNVANGNAAAGSELEDVK 331

  Fly   247 NCCFSTRYDLTEPPENSAKAQLPLKKDPLSGDGLFVLNL--PENTSSMSSTANLTRNKHLNDE-- 307
            .....:|..:....| ...|..|..:.|.:|..:.|.|.  |:....|:|...:|..:.|...  
Zfish   332 TSKIYSRGSVVMVDE-IINASPPNYRFPEAGLRVMVTNHFGPKTRLRMASRLIITERQRLVQSAN 395

  Fly   308 -------DDVADVVPGSIYAYPRDAS----------------GWM-QFWWIFVFPIKVTLSLLIP 348
                   |...|:..|::   |.|.|                |.| :..|:..:|:.:.|...||
Zfish   396 GVETAVVDGKPDIENGNV---PEDKSTEEKESELTTPFRLPDGCMNRTKWLISWPLLLILFFTIP 457

  Fly   349 HPMKYR--RLYPLSFIMCILCIGGNAYLIVWMLTAFGVAIHVPTIVMGLTFLAAGSTMPEAVSSL 411
            :..|.|  :.:.||||:..:.|...:|.:|||:|..|..:.:|.::||:||||||:::|:.::||
Zfish   458 NCAKSRWEKYFMLSFILSTVWIAVFSYFMVWMVTIIGYTLGIPDVIMGITFLAAGTSVPDCIASL 522

  Fly   412 ISLRNGENGIGVSNSLGANSLAILLSLGVPWFIKN-CIHYGTGEPQQVGTQGIEYNILILIISTM 475
            |..|.|...:.|||::|:|...||:.|||||.::. .::||:  ...:.::|:.|:: :|::.::
Zfish   523 IVARQGLGDMAVSNTIGSNVFDILVGLGVPWALQTMAVNYGS--VVMINSRGLLYSV-VLLLGSV 584

  Fly   476 ALFII-LSFSGYRLTKRVGVALFTVYGVFIVLQILIEMNVF 515
            ||.|: :..:.::|..::||.:..:|.||:...|:||.|||
Zfish   585 ALTILGIHLNHWKLDFKLGVYVLLLYAVFLCFSIMIEYNVF 625

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17167NP_001015257.2 TIGR00367 85..503 CDD:273039 144/468 (31%)
Na_Ca_ex 86..229 CDD:279963 60/142 (42%)
Na_Ca_ex 356..509 CDD:279963 52/154 (34%)
slc24a4bXP_002665845.2 TIGR00367 155..581 CDD:273039 137/436 (31%)
Na_Ca_ex 156..298 CDD:279963 59/141 (42%)
Na_Ca_ex 467..619 CDD:279963 52/154 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577433
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10846
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
65.850

Return to query results.
Submit another query.