DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12061 and slc24a2

DIOPT Version :9

Sequence 1:NP_001104467.2 Gene:CG12061 / 3354990 FlyBaseID:FBgn0040031 Length:441 Species:Drosophila melanogaster
Sequence 2:XP_017211234.1 Gene:slc24a2 / 751686 ZFINID:ZDB-GENE-060825-277 Length:628 Species:Danio rerio


Alignment Length:512 Identity:144/512 - (28%)
Similarity:238/512 - (46%) Gaps:136/512 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 EFPN---LMRQKSWIAIVVSTLVSMYLFVILAIVCDDYLVPAMERLCYTLRMTYDVAGATFLAAS 105
            |:|.   .:.|:...|:|:.....||:|:.||||||::.|||:..:...|.::.|||||||:||.
Zfish   116 EYPEDLFTLEQRRQGAVVLHMFGMMYMFIALAIVCDEFFVPALTVITEKLEISDDVAGATFMAAG 180

  Fly   106 TSAPELFVNFVGTFVTNGDIGLGTIVGSSVFNILVIAGVCGIFTQP-TKLDWWPVTRDTAWYLIA 169
            .||||||.:.:|.|:::.::|:||||||:|||||.:.|:|.:|::. ..|.|||:.||.::|:|.
Zfish   181 GSAPELFTSVIGVFISHSNVGIGTIVGSAVFNILFVIGMCALFSREILNLTWWPLFRDVSFYIIG 245

  Fly   170 IASLTYVLWDSLVMWYEAFALLLLYISYVIQLSFDRRIQNLVR---------------------- 212
            :..|.....|:.:.:.|:||||..|.|||..:.|:..::..::                      
Zfish   246 LIMLIVFFLDNYITYVESFALLSCYGSYVTFMKFNSSVETWIKTRLLGNQVDDIEAPPKVVSVPD 310

  Fly   213 ----------------------------------------------------HEHAESE------ 219
                                                                |:.|..:      
Zfish   311 DENKLSAKPRLQRGGSSASLHNTLMRNSIFQLMIHTLDPLSEGKFKEKASILHKIARKKGQDEAN 375

  Fly   220 ----------LLDED-------------PMT--------------REEEPLKGFRDHVCAKPKTE 247
                      |:|::             ||.              .|::||.      .|.|.|.
Zfish   376 GVEDGQRKCMLMDKNLPNSSNVEVEVTPPMNGSAGPEVEVEEEEEDEDQPLS------LAWPDTI 434

  Fly   248 YNFYQWTWWAIKYPAELMLACTVP-----SARSIFFLSMISAILWISLISYLLTWFLTILGYNLN 307
            ..  |.|:..| :|....|..::|     |:|..|.::.:.:|.||:..|||:.|:...:|..:.
Zfish   435 RK--QVTYLFI-FPIVFPLWLSLPDVRRESSRKFFPVTFLGSISWIAFFSYLMVWWAHQVGETIG 496

  Fly   308 IPDAIMGLTVLAAGTSVPEVASSYIVSKKGYGSMAICNAIGSNTFDILVCLGLPWLLKILIYQ-Q 371
            |.:.|||||:||||||:|::.:|.||::||.|.||:.:::|||.|||.|.|..||||..::.. .
Zfish   497 ITEEIMGLTILAAGTSIPDLITSVIVARKGLGDMAVSSSVGSNIFDITVGLPFPWLLFSMLNDFS 561

  Fly   372 KIDIDSTALTITTAMLVVTAAVLYLGLLARRFVMGKTVGYLSIIFYALFLIIACTLE 428
            .:.:.|..|.....:|.:....:.:.:...::.|.|.:|:|..:.|.:||:::..||
Zfish   562 SVAVSSNGLFCAIVLLFLMLLFVIISIAVCKWKMSKMLGFLMFLLYFVFLVVSVMLE 618

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12061NP_001104467.2 TIGR00367 61..422 CDD:273039 136/484 (28%)
Na_Ca_ex 62..199 CDD:279963 63/137 (46%)
Na_Ca_ex 276..424 CDD:279963 52/148 (35%)
slc24a2XP_017211234.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

Return to query results.
Submit another query.