DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12061 and ncx-9

DIOPT Version :9

Sequence 1:NP_001104467.2 Gene:CG12061 / 3354990 FlyBaseID:FBgn0040031 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_504342.2 Gene:ncx-9 / 182576 WormBaseID:WBGene00003574 Length:701 Species:Caenorhabditis elegans


Alignment Length:675 Identity:123/675 - (18%)
Similarity:214/675 - (31%) Gaps:273/675 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 YRHDMRYDIDARNCTLPAIVE-FP---------NLMRQKSW------------------------ 54
            |.:|..||..:...|..:|.: ||         ..:..|||                        
 Worm    23 YEYDQSYDYPSPGSTNFSIYDGFPFDEEMCSSEECLIDKSWTSEEKCEYIKCNQDSCEGGGYLTW 87

  Fly    55 --------------IAIVVSTLVSMYLFVILAIVCDDYLVPAMERLCYTLRMTYDVAGATFLAAS 105
                          |.|::..|..:.||||::.:.||:..||:..:...|||:..:||.||||..
 Worm    88 SHYVKCQYNIGVRVILIILGILYLIILFVIMSSIADDFFCPAISGIVSHLRMSESIAGVTFLAFG 152

  Fly   106 TSAPELFVNFVGTFVT---NGDIGLGTIVGSSVFNILVIAGVCGIFTQPTKLDWWPVTRDTAWYL 167
            ..||::|.:......|   ..|:.||.:.|:|:|...|:..:. |||:..|:...|..||..:|:
 Worm   153 NGAPDVFSSISSVLTTPKPKADLALGDLFGTSIFVTTVVLAII-IFTKSFKVAIIPTLRDLIFYM 216

  Fly   168 IAIASLT--YVLWDSLVMWYEA------------------------------------------- 187
            ..:|.:.  ::.:|.:.:|..|                                           
 Worm   217 TTLAFIVFCFLKFDKIEVWMPATFLGIYGVYVVTVIILGIYRTHRKKRNLKKKNKELEDFLSRPS 281

  Fly   188 ---------------------FALLLLYISY-----------------------------VIQLS 202
                                 .||....|.|                             ::.|.
 Worm   282 SAASTTPIFGAMKLKEETISVSALFHFMIGYSQFIKNLTRANLKRTTNNNNNDNKNEKRGIVNLG 346

  Fly   203 F--------DRRIQNLVRHEHAESEL--------LD-EDPMTREEEPLKGFRDH----------- 239
            |        :|:|..:.:....|::|        || .|...|||:  .|:..|           
 Worm   347 FSEPYSIPSERKISTIFKQNTFETDLESLESLADLDGSDDEGREEK--FGYAHHTVFTSHDQISL 409

  Fly   240 VCAKPK----TEYNFYQWTW--------W-----------------AIKYPAELMLACTVPS--- 272
            |.::.:    |.:..:.|.|        |                 .||.........||||   
 Worm   410 VASEIEEIEITTWRSWDWVWDLFNHLKSWPSRDEFSEMNIFIKIVTVIKVVPVFFFKLTVPSNEM 474

  Fly   273 --ARSIFFLSMISAI--------------------LWI--------------------------- 288
              .:.:|.|...::|                    ||:                           
 Worm   475 SWCKPLFILHCFASIQFALFSIQIITLKPFDGSPGLWLYGLGFSAILAMVAMYFLPLSKEQKYYK 539

  Fly   289 SLISYL-----LTWF----------LTILGYNLNIPDAIMGLTVLAAGTSVPEVASSYIVSKKGY 338
            .:.|||     :.|.          :|::|....:...::|||::|....:.::.:...|.|:||
 Worm   540 EIYSYLGFLMSIAWIYATSNEIVSVVTMIGVVTGLSMELLGLTIMAWSNCIGDIVADIAVVKQGY 604

  Fly   339 GSMAICNAIGSNTFDILVCLGLPWLLKILIYQQKIDIDSTALTITTAMLVVTAAVLYLGLLARRF 403
            ..||:..|||...|::|:..|||:.:.....::...:.:....:....|.::....::.|..:||
 Worm   605 PKMAMAAAIGGPLFNLLIGFGLPFTIAAAQGKEMELLINPVYRLLMLFLGISLVTTFVALFIQRF 669

  Fly   404 VMGKTVGYLSIIFYALFLIIACTLE 428
            .:.:....|.|..:.:|||..|..|
 Worm   670 TVRRPHAVLLIFIFVVFLIFICLAE 694

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12061NP_001104467.2 TIGR00367 61..422 CDD:273039 106/582 (18%)
Na_Ca_ex 62..199 CDD:279963 45/234 (19%)
Na_Ca_ex 276..424 CDD:279963 38/209 (18%)
ncx-9NP_504342.2 PLN03151 68..689 CDD:215604 109/623 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.