DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12061 and ncx-8

DIOPT Version :9

Sequence 1:NP_001104467.2 Gene:CG12061 / 3354990 FlyBaseID:FBgn0040031 Length:441 Species:Drosophila melanogaster
Sequence 2:NP_504341.1 Gene:ncx-8 / 182575 WormBaseID:WBGene00003573 Length:703 Species:Caenorhabditis elegans


Alignment Length:652 Identity:119/652 - (18%)
Similarity:215/652 - (32%) Gaps:247/652 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 WSSTD----FKPNGNEWE---YYPFAYRHDMRYDIDARNCTLPAIVEFPNLMRQKSWIAIVVSTL 62
            |:|.:    .|.|.:..|   |..:::....:|:|.||                  .:.|:|..:
 Worm    64 WTSEEKCAYIKCNQDSCEGGGYLTWSHYVKCQYNIGAR------------------VVLIIVGII 110

  Fly    63 VSMYLFVILAIVCDDYLVPAMERLCYTLRMTYDVAGATFLAASTSAPELFVNFVGTFVT---NGD 124
            ..::|||:::.:.||:..|::..:...|:|:..:||.||||....||::|.:......|   ...
 Worm   111 YLIFLFVVMSTIADDFFCPSISGIVTHLKMSESIAGVTFLAFGNGAPDVFGSISSVLSTPKPKAA 175

  Fly   125 IGLGTIVGSSVFNILVIAGVCGIFTQPTKLDWWPVTRDTAWYLIAIASLT--YVLWDSLVMWYEA 187
            :.||.:.|:|:|...|:..:. |||:..|:...|..||..:|:|.:|.:|  ::.:|.:.:|..|
 Worm   176 LALGDLFGTSIFVTTVVLAII-IFTKSFKVAIIPTLRDLIFYMITLAFITFCFLKFDKIEVWMPA 239

  Fly   188 --FALLLLYISYVIQLSFDR-RIQNLVRHEHAESELLDEDPMTREEE-----PL----------- 233
              ..:..:|:..||..|..| |.:||.:.:..|||..||..::|.|.     |:           
 Worm   240 TFLGIYAVYLLTVIAFSIYRTRRKNLKKKKQLESEKDDESAISRPESVASNMPICEKLEKKTESM 304

  Fly   234 -------------------------------------KGFRDHVCAK------------------ 243
                                                 :||.:.:.|.                  
 Worm   305 SVSTLFHVMVGLSRFMKKLNRTNKIQSIENKKQGFVNEGFSESLDADELTLKRNRMISLIFRNKT 369

  Fly   244 ------------------------------------------PKTEYNFYQWTWW---------- 256
                                                      ..||:.|.:.|.|          
 Worm   370 LDTDLESMKTLDEMESSDDEGREEEFAYAHHTVFTSHDQMSLAATEFEFRELTTWRSRDWIIDLL 434

  Fly   257 -----------------------AIKYPAELMLACTVPS-----ARSIFFLSMISAI-------- 285
                                   .|:......:..|:||     .:.:|.|...::|        
 Worm   435 YHLKPWPSREEFSEMNIFVKIIMIIRIIPSFFMKMTIPSNEMSWCKPLFLLHCFASIQFALFSIQ 499

  Fly   286 ------------LWI---------------------------SLISYL-----LTWF-------- 298
                        ||:                           .:.|||     :.|.        
 Worm   500 IINLKPFDGSPGLWLYGLAFSATIALLALCFLPLNKELKYHKEVYSYLGFLMSIAWIYATANEII 564

  Fly   299 --LTILGYNLNIPDAIMGLTVLAAGTSVPEVASSYIVSKKGYGSMAICNAIGSNTFDILVCLGLP 361
              :|::|....:...::||||::....:.::.:...|.|:||..||:..|||...|::|:..|||
 Worm   565 SVMTMVGVVTGLSQELLGLTVMSWSDCIGDIVADIAVIKQGYPKMAMAAAIGGPLFNLLIGFGLP 629

  Fly   362 WLLKILIYQQKIDIDSTALTITTAMLVVTAAVLYLGLLARRFVMGKTVGYLSIIFYALFLIIACT 426
            :.:.....:|...|.:....|....|.::....::.|...||.:........|..:..|:|..|.
 Worm   630 FTIASAQGKQIDLIINPVYRILLLFLGISLVTTFVALFIERFTVRWPHAVALIFIFINFVIFVCL 694

  Fly   427 LE 428
            .|
 Worm   695 AE 696

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12061NP_001104467.2 TIGR00367 61..422 CDD:273039 104/581 (18%)
Na_Ca_ex 62..199 CDD:279963 39/143 (27%)
Na_Ca_ex 276..424 CDD:279963 39/209 (19%)
ncx-8NP_504341.1 PLN03151 61..628 CDD:215604 104/582 (18%)
Na_Ca_ex 107..253 CDD:279963 40/146 (27%)
Na_Ca_ex 544..681 CDD:279963 31/136 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0530
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.