DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12061 and slc24a4

DIOPT Version :9

Sequence 1:NP_001104467.2 Gene:CG12061 / 3354990 FlyBaseID:FBgn0040031 Length:441 Species:Drosophila melanogaster
Sequence 2:XP_002933272.2 Gene:slc24a4 / 100489343 XenbaseID:XB-GENE-478288 Length:612 Species:Xenopus tropicalis


Alignment Length:519 Identity:163/519 - (31%)
Similarity:267/519 - (51%) Gaps:127/519 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 ARNCTLPAIVEFPNLM-----RQKSWIAIVVSTLVSMYLFVILAIVCDDYLVPAMERLCYTLRMT 93
            |:|||.|||.|||:.:     ||:.  |::.....::|:|..|||||||:.||::|::|..|.::
 Frog    81 AKNCTEPAINEFPDDLFSIKERQRG--AVLFHIFCALYMFYALAIVCDDFFVPSLEKICEKLHLS 143

  Fly    94 YDVAGATFLAASTSAPELFVNFVGTFVTNGDIGLGTIVGSSVFNILVIAGVCGIFT-QPTKLDWW 157
            .|||||||:||.:|.||||.:.:|.|:|:||:|:||||||:|||||.|.||||:|. |..:|.||
 Frog   144 EDVAGATFMAAGSSTPELFASVIGVFITHGDVGVGTIVGSAVFNILCIIGVCGVFAGQVVRLTWW 208

  Fly   158 PVTRDTAWYLIAIASLTYVLWDSLVMWYEAFALLLLYISYVIQLSFDRRIQNL------------ 210
            .:.||:.:|:|:|.:|...::|.:::|:|:..|:::|..|::.:.::.::|.|            
 Frog   209 SLFRDSMYYIISILALIIFIYDEIIVWWESLILIVMYFFYILIMKYNTKMQRLFTIKKNVGNGCP 273

  Fly   211 ----VRHEHAESELLDEDPMTREEEPLKGFRDH------------VCAKPKTEYNF--------- 250
                ::..:..|:.:.:||.......:|..:.:            :|:.| .:|.|         
 Frog   274 VGSELQDGNVYSDFVCDDPSVPLLWKVKASQQYYNRNSVVMVDEIICSSP-PKYRFPEAGLRIMI 337

  Fly   251 -------------------------------------------------------YQWT------ 254
                                                                   ||..      
 Frog   338 TNKFPPRTRLRMASRLIINERQRLLHSANGTSTTTLDGKQELLENGGLHVDKADDYQEENEANYL 402

  Fly   255 -------------WWAIKYPAELMLACTVPSA-----RSIFFLSMISAILWISLISYLLTWFLTI 301
                         .||..:|...:|..|:|:.     .:.|.|:.|::.|||::.||::.|.:|:
 Frog   403 VPFSVPSGCANIFKWAFSWPLICILYFTIPNCSKPRWENFFMLTFITSTLWIAIFSYIMVWMVTV 467

  Fly   302 LGYNLNIPDAIMGLTVLAAGTSVPEVASSYIVSKKGYGSMAICNAIGSNTFDILVCLGLPWLLKI 366
            :||.|.|||.|||:|.||||||||:..:|.||:::|.|.||:.|:||||.|||||.||:||.|:.
 Frog   468 IGYTLGIPDVIMGITFLAAGTSVPDCMASLIVARQGLGDMAVSNSIGSNVFDILVGLGVPWGLQT 532

  Fly   367 LI--YQQKIDIDSTALTITTAMLVVTAAVLYLGLLARRFVMGKTVGYLSIIFYALFLIIACTLE 428
            :|  |...:.|:|..|..:..:|:.:.|:...|:...::.:.|..|:..:..||:||..:..:|
 Frog   533 MIINYGSTVKINSKGLVYSVILLLGSVALTVGGIYVNKWKLDKKFGFYVLFLYAIFLCFSVLIE 596

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12061NP_001104467.2 TIGR00367 61..422 CDD:273039 148/479 (31%)
Na_Ca_ex 62..199 CDD:279963 67/137 (49%)
Na_Ca_ex 276..424 CDD:279963 64/149 (43%)
slc24a4XP_002933272.2 2A1904 <91..596 CDD:273344 155/507 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1168500at2759
OrthoFinder 1 1.000 - - FOG0000196
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10846
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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