DRSC/TRiP Functional Genomics Resources

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Protein Alignment tyn and rocf-1

DIOPT Version :9

Sequence 1:NP_001027032.1 Gene:tyn / 3354987 FlyBaseID:FBgn0284435 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_506848.1 Gene:rocf-1 / 180041 WormBaseID:WBGene00011948 Length:1262 Species:Caenorhabditis elegans


Alignment Length:320 Identity:61/320 - (19%)
Similarity:114/320 - (35%) Gaps:56/320 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 CKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVINSDAFRLDLTMAGQDCNTQSVTGVYSNTVVL 447
            |.:..|:.:|:|..|..|.::|..|..........::..:..:.:....|..::| |...::...
 Worm   915 CLEDGISFEVKTILPLTGEVFANDRKRVLECHKSFTEEAKPKMFLPFSTCGVKNV-GEQVDSRAQ 978

  Fly   448 QHHSVVM-------TKADKIYKVKCTYDMSSKNITFGMMPIRDPE------MIHINSSPEAPPPR 499
            .|..||:       |...:.:..:|.:  ...|....::|.|..|      ::......:|..|.
 Worm   979 YHMQVVLIIDQGNGTNTLQSFMAQCVH--QKVNYNKQVLPKRIEEALEELRLVPSKLEQKASMPS 1041

  Fly   500 IR---ILDTRQR----EVETVRIGDRLNFRIE-IPEDTPYGIFARSCVAMAKDARTSFKIIDDDG 556
            ::   ::|....    ||....||..|..:.. :||...||:..|:|..:....:....:||:.|
 Worm  1042 VQMQIVVDEGHHKLGAEVSAADIGMPLALKWSMVPESDAYGMHIRNCKVVDAVGKIDHTLIDEQG 1106

  Fly   557 CPTDPTIF--PGFTADGNALQSTYEAFRFTESYGVIFQCNVKYCLG---------PCE----PAV 606
            |..|..|.  |.:....:...|...||:..:...:..:|::..|..         .||    |..
 Worm  1107 CSADLQIIDHPHYDTYHDTASSHMWAFKVPDMSSLQIKCDILICSNIKSSVTNTTSCEDIPSPPF 1171

  Fly   607 C--------EWNMDSFESLGRRRRRSIESNDTKSEDDMNISQEILVL------DFGDEKR 652
            |        ...:....|..:.||.|:.|..:.:...:..|   :.|      ||.:|.|
 Worm  1172 CADVVTSPPNSILSDASSFIKHRRASVPSEVSPATQSVRTS---ICLSKSCRPDFSEEVR 1228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tynNP_001027032.1 PAN_4 46..97 CDD:405052
PAN_AP_HGF 131..210 CDD:238532
PAN_1 236..327 CDD:394981
ZP 382..598 CDD:214579 45/237 (19%)
rocf-1NP_506848.1 PHA03247 <561..909 CDD:223021
Zona_pellucida 915..1156 CDD:391783 46/243 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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