DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment tyn and cut-6

DIOPT Version :9

Sequence 1:NP_001027032.1 Gene:tyn / 3354987 FlyBaseID:FBgn0284435 Length:715 Species:Drosophila melanogaster
Sequence 2:NP_499400.2 Gene:cut-6 / 176520 WormBaseID:WBGene00000853 Length:572 Species:Caenorhabditis elegans


Alignment Length:376 Identity:82/376 - (21%)
Similarity:136/376 - (36%) Gaps:86/376 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   383 CKDTRIAVQVRTNKPFNGRIYALG--RSETCNIDVIN-SDAFRLDLTMAGQDCNTQ-----SVTG 439
            |...||.|:..|.:||.|.::.:.  ..|.|...... .|:..:.||:....||..     :..|
 Worm   234 CGPDRIGVKASTKQPFEGNVFVMDHYHDEECRAGPEKFPDSRSIGLTVPFSACNVHRYRSLNPKG 298

  Fly   440 VYSN-TVVLQHHSVVMTKADKIYKVKCTYDMSSKNIT-----------FGMMPIRDPEMIHI--N 490
            ::.. ::|...||:.|||.|:..||:|.|..:.|::|           |.....:.|:..:.  .
 Worm   299 IFVEVSIVFMFHSLFMTKTDQTVKVQCFYMEADKHVTVPLSVSMITTVFREQIYQMPQCAYTLRK 363

  Fly   491 SSPEAPPPRIRILDTRQREVETVRIGDRLNFRIEIPE------DTPYGIFARSC-VAMAKDARTS 548
            .:|:.|..|...|            |:.:..|.|..|      || :|:...|| |......|..
 Worm   364 GAPDGPIVRFATL------------GESVYHRWECIEVEGADKDT-FGMLVHSCYVDNGYGDRVD 415

  Fly   549 FKIIDDDGCPTDPTIF--PGFTADGNALQSTYEAFRFTESYGVIFQCNVKYCL---GPCE----P 604
              |:|.:||..|..:.  |.:..........|..|::.:...:.|||.:..||   |.||    |
 Worm   416 --ILDSNGCGLDAVLLSTPDYDTSLRLATKPYHVFKYADRPVLQFQCQITLCLKYDGGCEGITPP 478

  Fly   605 AVCEWNMDSFESLGRRRRRSIESNDTKSEDDMNISQEILVLDFGDEKREFFKADPSTDFAKDKTV 669
            ..|               :.:...|..........:..||....|.....   |..||     :|
 Worm   479 QNC---------------KKLPGEDGHHHHHHPEKRRKLVRRLADGVGTI---DVFTD-----SV 520

  Fly   670 TIIE-------PCP---TKTSVLALAVTCALMILLYISTLFCYYMKKWMQP 710
            |::|       |.|   ..|::..:.:.....|.::|.|::..:.|:..:|
 Worm   521 TVLEQEPACQQPLPYPLINTNLWIMGIITLTNIFVFILTVWFTFRKRRCKP 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tynNP_001027032.1 PAN_4 46..97 CDD:405052
PAN_AP_HGF 131..210 CDD:238532
PAN_1 236..327 CDD:394981
ZP 382..598 CDD:214579 57/245 (23%)
cut-6NP_499400.2 VWA 48..208 CDD:395045
ZP 233..480 CDD:214579 63/260 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X161
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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