DRSC/TRiP Functional Genomics Resources

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Protein Alignment tyn and COL6A6

DIOPT Version :9

Sequence 1:NP_001027032.1 Gene:tyn / 3354987 FlyBaseID:FBgn0284435 Length:715 Species:Drosophila melanogaster
Sequence 2:XP_011510726.1 Gene:COL6A6 / 131873 HGNCID:27023 Length:2279 Species:Homo sapiens


Alignment Length:660 Identity:114/660 - (17%)
Similarity:211/660 - (31%) Gaps:236/660 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PEQINARMA-FEKLTDFDFPGNTYYSVKNLSLYECQGWCREEADCQAAAFSFVVNPLSPSQETHC 94
            |:::...:. |..:...:|..|.:.|..::|....|.....:.....:|.|||....||::....
Human   672 PDRVQIGVVQFSDINKEEFQLNRFMSQSDISNAIDQMAHIGQTTLTGSALSFVSQYFSPTKGARP 736

  Fly    95 QLQ------NDSSAAN----PSAAPQRSANMYYMIKL------QLRSENVCHRPWSFERVPN-KV 142
            .::      .|..|.:    |:...::...:.|.:.:      ||  |.:..||.....|.| .:
Human   737 NIRKFLILITDGEAQDIVKEPAVVLRQEGVIIYSVGVFGSNVTQL--EEISGRPEMVFYVENFDI 799

  Fly   143 IRGLDNALIY--TSTKEACLSACLNERRFV---CRSVEYD-YNNMKCVLSDSDRRSS-------- 193
            ::.:::.|::  .|.:|.|....:.:..||   ..|::|| ||.||..:....:::.        
Human   800 LQRIEDDLVFGICSPREECKRIEVLDVVFVIDSSGSIDYDEYNIMKDFMIGLVKKADVGKNQVRF 864

  Fly   194 GQFVQLVDAQGTDYFENL--CLKPAQACKNNRSFGNS----QKMGVSEEKVAQYVG--------- 243
            |......|.:...|.::.  .|:.....:|:::.|.|    :.:|.|:....:..|         
Human   865 GALKYADDPEVLFYLDDFGTKLEVISVLQNDQAMGGSTYTAEALGFSDHMFTEARGSRLNKGVPQ 929

  Fly   244 -LHYYTDKE------LQVTSE-------------------------------------------- 257
             |...||.|      |..|::                                            
Human   930 VLIVITDGESHDADKLNATAKALRDKGILVLAVGIDGANPVELLAMAGSSDKYFFVETFGGLKGI 994

  Fly   258 ------SAC---RLACEIE----------------------SEFLC---RSF------LYLGQPQ 282
                  |.|   ::.|||:                      .|||.   :.|      :.:|..|
Human   995 FSDVTASVCNSSKVDCEIDKVDLVFLMDGSTSIQPNDFKKMKEFLASVVQDFDVSLNRVRIGAAQ 1059

  Fly   283 GSQYNCRLYHLDHKTLPDGP-STYLNHERPLIDHGEPIGQYFEN--------------QCEKAAG 332
            .|.    .||      |:.| .|::. |:.:....|.|.|.|.|              :.:..:.
Human  1060 FSD----TYH------PEFPLGTFIG-EKEISFQIENIKQIFGNTHIGAALREVEHYFRPDMGSR 1113

  Fly   333 LGAGSPPGTL--------DK------------IDTLPVSLDTIEDPNLTNLTRNDVNCDKTGTC- 376
            :..|:|...|        |:            ||...|.:..::|..|..:         |||. 
Human  1114 INTGTPQVLLVLTDGQSQDEVAQAAEALRHRGIDIYSVGIGDVDDQQLIQI---------TGTAE 1169

  Fly   377 YDVSVHCKDTRIAVQVRTNKPFNGRIYALGRSETCNIDVI------------------------N 417
            ..::||..|.    ..:.||.....|........|.:||:                        .
Human  1170 KKLTVHNFDE----LKKVNKRIVRNICTTAGESNCFVDVVVGFDVSTQEKGQTLLEGQPWMETYL 1230

  Fly   418 SDAFRLDLTMAGQDCNTQSVTGVYSNTVVLQHHSVVMTKADKIYKVKCTYDMSSKNITFGM--MP 480
            .|..|...::.|..|...:.|.|   :|..|     :|.|.:.|..|  :::.|:||...:  :.
Human  1231 QDILRAISSLNGVSCEVGTETQV---SVAFQ-----VTNAMEKYSPK--FEIYSENILNSLKDIT 1285

  Fly   481 IRDPEMIHIN 490
            ::.|.:::.|
Human  1286 VKGPSLLNAN 1295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tynNP_001027032.1 PAN_4 46..97 CDD:405052 11/50 (22%)
PAN_AP_HGF 131..210 CDD:238532 20/93 (22%)
PAN_1 236..327 CDD:394981 30/205 (15%)
ZP 382..598 CDD:214579 25/135 (19%)
COL6A6XP_011510726.1 vWFA 42..208 CDD:294047
VWA 245..412 CDD:278519
YfbK 451..>609 CDD:225187
VWA 452..621 CDD:278519
VWA 638..806 CDD:278519 24/135 (18%)
VWA 825..997 CDD:278519 25/171 (15%)
VWA 1016..1186 CDD:278519 34/193 (18%)
VWA 1222..1361 CDD:214621 17/84 (20%)
Collagen 1435..1494 CDD:189968
Collagen 1474..1531 CDD:189968
Collagen 1571..1660 CDD:189968
Collagen 1652..1721 CDD:189968
VWA 1774..1938 CDD:278519
vWFA_subfamily_ECM 1980..2158 CDD:238727
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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