DRSC/TRiP Functional Genomics Resources

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Protein Alignment tyn and COL12A1

DIOPT Version :9

Sequence 1:NP_001027032.1 Gene:tyn / 3354987 FlyBaseID:FBgn0284435 Length:715 Species:Drosophila melanogaster
Sequence 2:XP_011533736.1 Gene:COL12A1 / 1303 HGNCID:2188 Length:3118 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tynNP_001027032.1 PAN_4 46..97 CDD:405052
PAN_AP_HGF 131..210 CDD:238532
PAN_1 236..327 CDD:394981
ZP 382..598 CDD:214579
COL12A1XP_011533736.1 fn3 26..105 CDD:278470
vWA_collagen_alphaI-XII-like 139..302 CDD:238759
fn3 336..415 CDD:278470
vWA_collagen_alphaI-XII-like 439..602 CDD:238759
fn3 634..712 CDD:278470
FN3 724..805 CDD:238020
fn3 817..892 CDD:278470
fn3 906..986 CDD:278470
FN3 1002..1075 CDD:238020
FN3 1090..1176 CDD:238020
vWA_collagen_alphaI-XII-like 1198..1361 CDD:238759
fn3 1387..1465 CDD:278470
FN3 1474..1548 CDD:214495
FN3 1569..1652 CDD:238020
fn3 1656..1727 CDD:278470
fn3 1754..1834 CDD:278470
fn3 1847..1925 CDD:278470
fn3 1938..2016 CDD:278470
fn3 2026..2105 CDD:278470
FN3 2118..2197 CDD:238020
fn3 2207..2282 CDD:278470
vWA_collagen_alphaI-XII-like 2322..2486 CDD:238759
TSPN 2520..2712 CDD:214560
Collagen 2765..2891 CDD:189968
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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