DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED21 and SRB7

DIOPT Version :9

Sequence 1:NP_001015223.1 Gene:MED21 / 3354977 FlyBaseID:FBgn0040020 Length:142 Species:Drosophila melanogaster
Sequence 2:NP_010594.3 Gene:SRB7 / 851903 SGDID:S000002716 Length:140 Species:Saccharomyces cerevisiae


Alignment Length:139 Identity:41/139 - (29%)
Similarity:62/139 - (44%) Gaps:27/139 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTP-------IPCPPQE---DY 55
            |.|||||||..::|..|.||..:..|.:..      .|||:....|       ...||:|   ..
Yeast     1 MTDRLTQLQICLDQMTEQFCATLNYIDKNH------GFERLTVNEPQMSDKHATVVPPEEFSNTI 59

  Fly    56 AQLFAQLIARCAKDIDTLIESLPNEDSSIELQNSSL-----KRLEIENQGTARDLEEVVQKGELL 115
            .:|...:|.: .:.|:.||:|||..|.|.|.|...:     |.:|:|::..     |.::|.|.|
Yeast    60 DELSTDIILK-TRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKI-----EAIKKKEKL 118

  Fly   116 LEKMQYSLE 124
            |..:...:|
Yeast   119 LRHVDSLIE 127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED21NP_001015223.1 Med21 1..128 CDD:288119 41/139 (29%)
SRB7NP_010594.3 Med21 1..131 CDD:402689 41/139 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157345802
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 46 1.000 Inparanoid score I1876
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004699
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104457
Panther 1 1.100 - - LDO PTHR13381
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.790

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