DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED21 and med21

DIOPT Version :9

Sequence 1:NP_001015223.1 Gene:MED21 / 3354977 FlyBaseID:FBgn0040020 Length:142 Species:Drosophila melanogaster
Sequence 2:NP_998588.1 Gene:med21 / 406732 ZFINID:ZDB-GENE-040426-2763 Length:145 Species:Danio rerio


Alignment Length:135 Identity:79/135 - (58%)
Similarity:97/135 - (71%) Gaps:9/135 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPI----PCPPQEDYAQLFAQ 61
            ||||||||||.||..|:.|||||||:||.:.|:.|.|.     ||.|    |..|.|:||||||.
Zfish     1 MADRLTQLQDAVNSLADQFCNAIGVLQQCAPPASFSNI-----QTAINKDQPSNPTEEYAQLFAA 60

  Fly    62 LIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELLLEKMQYSLECI 126
            ||||.|||:|.||:|||:|:|:..||.:||::||.|||..|..|||||.:|:.||||:|.:|..|
Zfish    61 LIARTAKDVDVLIDSLPSEESTAALQAASLRQLEEENQEAAARLEEVVYRGDALLEKIQTALADI 125

  Fly   127 AQAQL 131
            ||:||
Zfish   126 AQSQL 130

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED21NP_001015223.1 Med21 1..128 CDD:288119 75/130 (58%)
med21NP_998588.1 Med21 1..127 CDD:288119 75/130 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593665
Domainoid 1 1.000 133 1.000 Domainoid score I5032
eggNOG 1 0.900 - - E1_KOG1510
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3148
Inparanoid 1 1.050 139 1.000 Inparanoid score I4495
OMA 1 1.010 - - QHG48721
OrthoDB 1 1.010 - - D1583203at2759
OrthoFinder 1 1.000 - - FOG0004699
OrthoInspector 1 1.000 - - oto41143
orthoMCL 1 0.900 - - OOG6_104457
Panther 1 1.100 - - LDO PTHR13381
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2635
SonicParanoid 1 1.000 - - X5037
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
1615.840

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