DRSC/TRiP Functional Genomics Resources

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Protein Alignment MED21 and Med21

DIOPT Version :9

Sequence 1:NP_001015223.1 Gene:MED21 / 3354977 FlyBaseID:FBgn0040020 Length:142 Species:Drosophila melanogaster
Sequence 2:NP_079591.1 Gene:Med21 / 108098 MGIID:1347064 Length:144 Species:Mus musculus


Alignment Length:146 Identity:81/146 - (55%)
Similarity:100/146 - (68%) Gaps:10/146 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MADRLTQLQDTVNQQAEHFCNAIGVIQQTSLPSKFVNFERIGPQTPI----PCPPQEDYAQLFAQ 61
            ||||||||||.||..|:.|||||||:||...|:.|.|.     ||.|    |..|.|:||||||.
Mouse     1 MADRLTQLQDAVNSLADQFCNAIGVLQQCGPPASFSNI-----QTAINKDQPANPTEEYAQLFAA 60

  Fly    62 LIARCAKDIDTLIESLPNEDSSIELQNSSLKRLEIENQGTARDLEEVVQKGELLLEKMQYSLECI 126
            ||||.|||||.||:|||:|:|:..||.:||.:||.||...|..||:||.:|::||||:|.:|..|
Mouse    61 LIARTAKDIDVLIDSLPSEESTAALQAASLYKLEEENHEAATCLEDVVYRGDMLLEKIQSALADI 125

  Fly   127 AQAQLDMQ-ITLKHDL 141
            ||:||..: :|..|.|
Mouse   126 AQSQLKTRSVTHSHSL 141

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
MED21NP_001015223.1 Med21 1..128 CDD:288119 74/130 (57%)
Med21NP_079591.1 Med21 1..127 CDD:371423 74/130 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848250
Domainoid 1 1.000 130 1.000 Domainoid score I5205
eggNOG 1 0.900 - - E1_KOG1510
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H3148
Inparanoid 1 1.050 138 1.000 Inparanoid score I4523
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG48721
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004699
OrthoInspector 1 1.000 - - oto94739
orthoMCL 1 0.900 - - OOG6_104457
Panther 1 1.100 - - LDO PTHR13381
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2635
SonicParanoid 1 1.000 - - X5037
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.830

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