DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Set1 and ATX2

DIOPT Version :10

Sequence 1:NP_001015221.1 Gene:Set1 / 3354971 FlyBaseID:FBgn0040022 Length:1641 Species:Drosophila melanogaster
Sequence 2:NP_172074.6 Gene:ATX2 / 837093 AraportID:AT1G05830 Length:1083 Species:Arabidopsis thaliana


Alignment Length:1317 Identity:275/1317 - (20%)
Similarity:456/1317 - (34%) Gaps:405/1317 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   465 PEEIDNWD----EEEHDKNSIVPTHYGCMAKLQPPVPSNVNFA--------TKLQSVTQPNSDPG 517
            |:|.:..|    .|.||..:..|..|..:..:.....|:.:..        .|:.::..|.||..
plant     8 PKEEEGEDTQIKTELHDHAADNPVRYASLESVYSVSSSSSSLCCKTAAGSHKKVNALKLPMSDSF 72

  Fly   518 TVDLDTRIALIF-----KGKTFGNAPPFLQ---MDSSDSETDQGKPEVFSDVNSDSNNSENKKRS 574
            .:....|..::.     |.:.......||:   :.:...|.|....::.|....|....||||:.
plant    73 ELQPHRRPEIVHVYCRRKRRRRRRRESFLELAILQNEGVERDDRIVKIESAELDDEKEEENKKKK 137

  Fly   575 CEKNNKVLHQPNEASDISSDEELIGKKDKSKLSLICEKEVNDDNMSLSSLSSQEDPIQTKEGAEY 639
            .:|..                  ||..:..||.:        |:.:||  .|...|::   |...
plant   138 QKKRR------------------IGNGELMKLGV--------DSTTLS--VSATPPLR---GCRI 171

  Fly   640 KSIMSSYMYSHSNQNPFYYHASGYGHYLSGIPSESASRLFSNGAYVHSEYLKAVAS------FNF 698
            |::                        .||...:.:||...|......:.:.|.|:      .::
plant   172 KAV------------------------CSGNKQDGSSRSKRNTVKNQEKVVTASATAKKWVRLSY 212

  Fly   699 DSFSKPYDYNKGALSDQNDGIRQKV----------KQVIGYIVEELKQILKRDVNKRMIEITAFK 753
            |.....:..          |::.||          ..::||.||....|:|              
plant   213 DGVDPKHFI----------GLQCKVFWPLDAVWYPGSIVGYNVETKHHIVK-------------- 253

  Fly   754 HFETWWD---EHTSKARSKPLFEKADSTVNTPLNCIKDTSYNEKNPDINLLINAHREVADFQSYS 815
                :.|   |..:..|.|                ||.....:....:|:....:..|.|.|.|.
plant   254 ----YGDGDGEELALRREK----------------IKFLISRDDMELLNMKFGTNDVVVDGQDYD 298

  Fly   816 SIGLRAAMPKLPSFRRIRKHPSPIPTKRNFLERD---------------LSDQEEMVQRSDSDKE 865
            .:.:.||     ||...          ::|..||               :.|:..:|:|...:.:
plant   299 ELVILAA-----SFEEC----------QDFEPRDIIWAKLTGHAMWPAIIVDESVIVKRKGLNNK 348

  Fly   866 DSN-----VEI---SDTARSKIKGPVPIQESDSKSHTSGLNSKR--KGSASSFFSSSSSSTSSEA 920
            .|.     |:.   .|.||.::|..|        |...||.|:.  |.....|..:...:.....
plant   349 ISGGRSVLVQFFGTHDFARIQVKQAV--------SFLKGLLSRSPLKCKQPRFEEAMEEAKMYLK 405

  Fly   921 EYEA------------IDCVEKARTSEEDSPRGYGQRNLNQRTTTIRNRNL------VGTMDVIN 967
            ||:.            .||.|:..:.||||... |..........:|...|      :|.:.:||
plant   406 EYKLPGRMDQLQKVADTDCSERINSGEEDSSNS-GDDYTKDGEVWLRPTELGDCLHRIGDLQIIN 469

  Fly   968 VRNLCSGSNEFKKENVTKRTKKNIYSDTDEDNDRTLFPALKEKNIST-----ILSDLE------- 1020
            :..:.:.|..||.   :|.|....|:.|.:      |.:||:.|.|.     :|.|.|       
plant   470 LGRIVTDSEFFKD---SKHTWPEGYTATRK------FISLKDPNASAMYKMEVLRDAESKTRPVF 525

  Fly  1021 EISKDSCIGLDENGIEPTI--------LRKI----PNTPKLNEECRRSLTPVPPPGYNEEEIKKK 1073
            .::.:|  |....|..|:.        ::||    .|...|.|....|.|.:  .|::..|:.|.
plant   526 RVTTNS--GEQFKGDTPSACWNKIYNRIKKIQIASDNPDVLGEGLHESGTDM--FGFSNPEVDKL 586

  Fly  1074 VD---CKQKPSFEYDRIYSDSEEEKEYQERRKRNTEYMAQMEREFLEEQEKRIE-KSLDK----- 1129
            :.   ..:.||....|.||..    :||:   ..|.|           :..|:| |.|||     
plant   587 IQGLLQSRPPSKVSQRKYSSG----KYQD---HPTGY-----------RPVRVEWKDLDKCNVCH 633

  Fly  1130 -NLQSPNNIVKNNNSPRNKNDETRKTAISQTRSCFESASKVDTTLVNIISVENDINEFGPHEEGD 1193
             :.:..||:....:..|         .:..|| |:                    .:..||....
plant   634 MDEEYENNLFLQCDKCR---------MMVHTR-CY--------------------GQLEPHNGIL 668

  Fly  1194 VLTNGCNKMYTNSKGKTKRTQSPVYSEGGSSQASQASQVALEHCYSLPPHSVSLGDYPSGKVNET 1258
            .|.|.|..:..:...:.  ...||.  ||:.:.:...:.|...|....|.:..|.......::..
plant   669 WLCNLCRPVALDIPPRC--CLCPVV--GGAMKPTTDGRWAHLACAIWIPETCLLDVKKMEPIDGV 729

  Fly  1259 KNILKREAENIAIVSQMTRTGPGRPRKDPICIQKKK-------RDLAPRMSNVKSKMTPNGDEWP 1316
            |.:.|...:.:..:..::...         |||...       ..|..|.:.:          ..
plant   730 KKVSKDRWKLLCSICGVSYGA---------CIQCSNNTCRVAYHPLCARAAGL----------CV 775

  Fly  1317 DLAHKNVHFVPCDMYKTRDQNEEMVILYTFLTKGIDAEDINFIKMSYLDHLHKEPYAMFLNNTHW 1381
            :||.::..|:   :....|:.::.:.|.:|..:                  |::.....|...:.
plant   776 ELADEDRLFL---LSMDDDEADQCIRLLSFCKR------------------HRQTSNYHLETEYM 819

  Fly  1382 VDHCTTDRAFWPPPSKKRRKDDELIRHKTGCARTEGFYKLDVREKAKHKYHYAKANTEDSFNEDR 1446
            :........:.|||            :.:||||||.:..|..|.:                    
plant   820 IKPAHNIAEYLPPP------------NPSGCARTEPYNYLGRRGR-------------------- 852

  Fly  1447 SDEPTALTNHHHNKLISKMQ-----GISREARSNQRRLLTAFGS-----------MGESELLKFN 1495
             .||.||......:|..:.|     |.||...|...|:   :||           :..:|...|.
plant   853 -KEPEALAGASSKRLFVENQPYIVGGYSRHEFSTYERI---YGSKMSQITTPSNILSMAEKYTFM 913

  Fly  1496 QLKFRKKQLKFAKSAIHDWGLFAMEPIAADEMVIEYVGQMIRPVVADLRE-TKYEAIGIGSSYLF 1559
            :..:||: |.|.||.||.:|:||..|..|.:|||||.|:::||.:||.|| ..|.::....:|:|
plant   914 KETYRKR-LAFGKSGIHGFGIFAKLPHRAGDMVIEYTGELVRPPIADKREHLIYNSMVGAGTYMF 977

  Fly  1560 RIDMETIIDATKCGNLARFINHSCNPNCYAKVITIESEKKIVIYSKQPIGINEEITYDYKFPLED 1624
            |||.|.:||||:.|::|..|||||.||||::||::..::.|:|::|:.:...||:||||:|...|
plant   978 RIDNERVIDATRTGSIAHLINHSCEPNCYSRVISVNGDEHIIIFAKRDVAKWEELTYDYRFFSID 1042

  Fly  1625 EKIPCLCGAQGCRGTLN 1641
            |::.|.||...|||.:|
plant  1043 ERLACYCGFPRCRGVVN 1059

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set1NP_001015221.1 RRM_Set1 99..191 CDD:409745
U2AF_lg 255..>386 CDD:273727
N-SET 1352..1496 CDD:463344 28/159 (18%)
SET_SETD1 1490..1637 CDD:380946 66/147 (45%)
ATX2NP_172074.6 Tudor_Agenet_AtEML-like 221..271 CDD:410475 14/93 (15%)
PWWP_AtATX1-like 314..410 CDD:438970 20/103 (19%)
FYRN 463..513 CDD:461787 15/58 (26%)
FYRC 524..610 CDD:197781 19/93 (20%)
PHD_ATX1_2_like 628..674 CDD:276969 11/75 (15%)
ePHD_ATX1_2_like 685..806 CDD:277132 21/164 (13%)
SET_SETD1-like 906..1055 CDD:380916 66/149 (44%)
Blue background indicates that the domain is not in the aligned region.

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