DRSC/TRiP Functional Genomics Resources

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Protein Alignment Set1 and SUVH4

DIOPT Version :10

Sequence 1:NP_001015221.1 Gene:Set1 / 3354971 FlyBaseID:FBgn0040022 Length:1641 Species:Drosophila melanogaster
Sequence 2:NP_196900.1 Gene:SUVH4 / 831244 AraportID:AT5G13960 Length:624 Species:Arabidopsis thaliana


Alignment Length:641 Identity:125/641 - (19%)
Similarity:208/641 - (32%) Gaps:228/641 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly  1208 GKTKRTQSPVYSEGGSS-QASQASQVALEHCYSLPPHSVS-LGDYPSGKVNETKNILKREAENIA 1270
            ||.||..:|..:|..|| :..:..|.||:....|....|. |.|..|....:...:.::|.||: 
plant     3 GKRKRANAPDQTERRSSVRVQKVRQKALDEKARLVQERVKLLSDRKSEICVDDTELHEKEEENV- 66

  Fly  1271 IVSQMTRTGPGRP-RKDP---ICIQKKKRDLAPRMSNVKSKMTPNGDEWPDLAHKNVHFVPC--- 1328
                     .|.| |:.|   ..:||.|:.|:..::.....:.|:......|...|..::.|   
plant    67 ---------DGSPKRRSPPKLTAMQKGKQKLSVSLNGKDVNLEPHLKVTKCLRLFNKQYLLCVQA 122

  Fly  1329 -----DMYKTRDQNEEMVILYTFL----TKGIDA--------------------EDINFIKMSYL 1364
                 |:....:..:...|||...    ..|||.                    ..|:::.|.|.
plant   123 KLSRPDLKGVTEMIKAKAILYPRKIIGDLPGIDVGHRFFSRAEMCAVGFHNHWLNGIDYMSMEYE 187

  Fly  1365 DHL--HKEPYAMF----------LNNTHWVDHCTTDRAFWPPPSKKRRKDDELIR---------- 1407
            ...  :|.|.|:.          |:|...|.:  |.:........||:..|:|:.          
plant   188 KEYSNYKLPLAVSIVMSGQYEDDLDNADTVTY--TGQGGHNLTGNKRQIKDQLLERGNLALKHCC 250

  Fly  1408 -----------HKTGCART------EGFYKLD-------VREKAKHKYHYAKAN-----TEDSFN 1443
                       |....:.|      :|.||::       |.....:||...:..     |.|..|
plant   251 EYNVPVRVTRGHNCKSSYTKRVYTYDGLYKVEKFWAQKGVSGFTVYKYRLKRLEGQPELTTDQVN 315

  Fly  1444 EDRSDEPTA----------------------LTNHHHNKLISKMQGIS----------------- 1469
            ......||:                      .||...:..:|...|.:                 
plant   316 FVAGRIPTSTSEIEGLVCEDISGGLEFKGIPATNRVDDSPVSPTSGFTYIKSLIIEPNVIIPKSS 380

  Fly  1470 -----REARSNQRRLLTA--------FGSMGESELLKFNQLKFR----------------KKQLK 1505
                 |.:.::.::...|        :..:.:..|::...:.|.                :|:|:
plant   381 TGCNCRGSCTDSKKCACAKLNGGNFPYVDLNDGRLIESRDVVFECGPHCGCGPKCVNRTSQKRLR 445

  Fly  1506 F----AKSAIHDWGLFAMEPIAADEMVIEYVGQMIRPVVADLRETKYEAIGIGSSYLFRIDM--- 1563
            |    .:||...|.:.:.|.|.|...|.||:|.:.|  .||:     :.|. .:.|:|.||.   
plant   446 FNLEVFRSAKKGWAVRSWEYIPAGSPVCEYIGVVRR--TADV-----DTIS-DNEYIFEIDCQQT 502

  Fly  1564 --------------------------------ETIIDATKCGNLARFINHSCNPNCYAKVITIES 1596
                                            |..|||...||.||||||||.||.:.:.:....
plant   503 MQGLGGRQRRLRDVAVPMNNGVSQSSEDENAPEFCIDAGSTGNFARFINHSCEPNLFVQCVLSSH 567

  Fly  1597 E----KKIVIYSKQPIGINEEITYDYKFPLED--------EKIPCLCGAQGCRGTL 1640
            :    .::|:::...|...:|:||||.:.|:.        :::.|.|||..||..|
plant   568 QDIRLARVVLFAADNISPMQELTYDYGYALDSVHGPDGKVKQLACYCGALNCRKRL 623

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set1NP_001015221.1 RRM_Set1 99..191 CDD:409745
U2AF_lg 255..>386 CDD:273727
N-SET 1352..1496 CDD:463344 35/266 (13%)
SET_SETD1 1490..1637 CDD:380946 51/213 (24%)
SUVH4NP_196900.1 SAD_SRA 147..303 CDD:460476 25/157 (16%)
SET_AtSUVH-like 360..595 CDD:380943 49/242 (20%)
Blue background indicates that the domain is not in the aligned region.

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