DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Set1 and SDG14

DIOPT Version :10

Sequence 1:NP_001015221.1 Gene:Set1 / 3354971 FlyBaseID:FBgn0040022 Length:1641 Species:Drosophila melanogaster
Sequence 2:NP_191733.3 Gene:SDG14 / 825347 AraportID:AT3G61740 Length:1018 Species:Arabidopsis thaliana


Alignment Length:1259 Identity:249/1259 - (19%)
Similarity:412/1259 - (32%) Gaps:399/1259 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   533 TFGNAPPFLQMDSSDSETDQGK-----------------------PEVFSDVNSDSNNSENKKRS 574
            ||.|..  |:....|||.:.|:                       ||:.:..:|...:.|..::.
plant     9 TFENQN--LKRCKIDSEIEYGRKKGEIIVYKKRQRATVDQPCSKEPELLTSSSSSLTSKEESQQV 71

  Fly   575 CEKNNKVLHQPNEASDISSDEELIGK-KDKSKLSLICEKEVNDDNMSLSSLSSQEDPIQTKEGAE 638
            |...:|.......|......:.::|. |...:.....|...:||::||              |.:
plant    72 CSDQSKSSRGRVRAVPSRFKDSIVGTWKSSRRKGESTESSHDDDDVSL--------------GKK 122

  Fly   639 YKSIMSSYMYSHSNQNPFYYHASGYGHYLSGIPSESASRLFSNGAYVHSEYLKAVASFNFDSFSK 703
            .|....|.....|..:..:....      :|..||           |..:|.....|::..:|..
plant   123 VKGFSGSSKLHRSKDSKVFPRKD------NGDSSE-----------VDCDYWDVQISYDDANFGM 170

  Fly   704 PYDYNKGALSDQNDGIRQKVKQVIGYIVEELKQILKRDVNKRMIEITAFKHFETWWDEHTSKARS 768
            |         .::|..|:.|.:...:.|.:|            :.....|.|..|     .....
plant   171 P---------KKSDASRKGVYKPEEFTVGDL------------VWAKCGKRFPAW-----PAVVI 209

  Fly   769 KPLFEKADSTVNTPLNCIKDTSYNEKNPDINLLINAHREVADFQSYSSIGLRAAMPKLPSFRRIR 833
            .|:.:..|..:.   :|:...        |.::...:.:....:.|:.:......|......:.:
plant   210 DPISQAPDGVLK---HCVPGA--------ICVMFFGYSKDGTQRDYAWVRQGMVYPFTEFMDKFQ 263

  Fly   834 KHPSPIPTKRNFLERDLSDQEEMVQRSDSDKEDSNVEISDTARSKIKGPVPIQESDSKSHTSGLN 898
            ...:....|.:...:.|   ||.|...:.:..|:.:...|::.:         |||         
plant   264 DQTNLFNYKASEFNKAL---EEAVLAENGNFGDAEIISPDSSAT---------ESD--------- 307

  Fly   899 SKRKGSASSFFSSSSSSTSSEAEYEAIDCVEKARTSEEDSPRGYGQRNLNQRTTTIRNRNLVGTM 963
             :..|.||.|          :..|.     |..||.:     |.|        :.:..::|..|.
plant   308 -QDYGPASRF----------QGSYH-----EDIRTCD-----GCG--------SVMPLKSLKRTK 343

  Fly   964 DVINVRNLCSGSNEFKKENVTKRTKKNIYSDTDE--------------------DNDRTLFPALK 1008
            |......||...::.:|.|......|.|:..:|:                    .|:|  |..|:
plant   344 DSQPEELLCKHCSKLRKSNQYCGICKRIWHPSDDGDWVCCDGCDVWVHAECDNITNER--FKELE 406

  Fly  1009 EKN------------ISTILSDLEEI----SKDSCIGLDE------NGIEPTILRKIPNTPKLNE 1051
            ..|            ..|||.:...:    .|.:..||.:      ||:|.|.:||....     
plant   407 HNNYYCPDCKVQHELTPTILEEQNSVFKSTEKTTETGLPDAITVVCNGMEGTYIRKFHAI----- 466

  Fly  1052 ECRRSLTPVPPPGYNEEEIKKKVDC---KQKPSFEYDRIYSDSEEEKEYQERRKRNTEYMAQMER 1113
            ||                  |...|   ||.|| |::|......::.:|..|.|   :.|..:|:
plant   467 EC------------------KCGSCGSRKQSPS-EWERHTGCRAKKWKYSVRVK---DTMLPLEK 509

  Fly  1114 EFLEEQEKRIE-KSLDKNLQSPNNIVKNNNSPRNKNDETRKTAISQTRSCFESASKVDTTLVNII 1177
            ...|.....:| :.|||  |...::::....|......|.:.|:.:....:|....:   :.|..
plant   510 WIAEFSTYTLETQMLDK--QKMLSLLEEKYEPVRAKWTTERCAVCRWVEDWEENKMI---ICNRC 569

  Fly  1178 SVENDINEFGPHEEGDVLTNGCNKMYTNSKGKTKRTQSPVYSEGGSSQASQAS------------ 1230
            .|......:|..:..|:.:..|....|..   .:|.......:||:.:.|...            
plant   570 QVAVHQECYGVSKSQDLTSWVCRACETPD---IERDCCLCPVKGGALKPSDVEGLWVHVTCAWFR 631

  Fly  1231 -QVALEHCYSLPPHSVSLGDYPSGKVNETKNILK----------------------REAENIAIV 1272
             :|...:..::.| :|.|...|:....:...|.|                      |...|:.: 
plant   632 PEVGFLNHENMEP-AVGLFKIPANSFLKVCTICKQTHGSCVHCCKCATHFHAMCASRAGYNMEL- 694

  Fly  1273 SQMTRTGPGRPRKDPICIQKKKRDLAPRMSNVKSKMTPNGDEWPDLAHKNVHFVPCDMYKTRDQN 1337
            ..:.:.|..|.||...|...:|.|                   ||                    
plant   695 HCLEKNGVQRTRKSVYCSFHRKPD-------------------PD-------------------- 720

  Fly  1338 EEMVILYTFLTKGIDAEDINFIKMSYLDHLHKEPYAMF-----LNNTHWVDHCTTDRAFWPPPSK 1397
             .:|:::|                         |..:|     |.|.:                 
plant   721 -SVVVVHT-------------------------PSGVFGSRNLLQNQY----------------- 742

  Fly  1398 KRRKDDELIRHKTGCARTEGFYKLDVREK--------AKHKYHYAKANTEDSFN--EDRSDEPTA 1452
            .|.|...|:..|.  .:..||......|:        |.....|:::||:....  ..|...|  
plant   743 GRAKGSRLVLTKK--MKLPGFQTQTQAEQSRVFDSLSAARCRIYSRSNTKIDLEAISHRLKGP-- 803

  Fly  1453 LTNHHHNKLISKMQGISREARSNQRRLLTAFGSMGE--SELLK---------------FNQLKFR 1500
              :||....|..:... :.:.|.:...::.|..:|.  ||.|:               |...:.|
plant   804 --SHHSLSAIENLNSF-KASFSFRAPFMSVFCFLGATFSEYLRKILISIYLVTHQEADFTSFRER 865

  Fly  1501 KKQLK--------FAKSAIHDWGLFAMEPIAADEMVIEYVGQMIRPVVADLRETKYEAIGIGSSY 1557
            .|.|:        |.||.||.|||||.:.|...||:|||.|..:|..||||||..|.:.| ...|
plant   866 LKHLQRTENFRVCFGKSGIHGWGLFARKSIQEGEMIIEYRGVKVRRSVADLREANYRSQG-KDCY 929

  Fly  1558 LFRIDMETIIDATKCGNLARFINHSCNPNCYAKVITI--ESEKKIVIYSKQPIGINEEITYDYKF 1620
            ||:|..|.:||||..||:||.|||||.|||||:::::  ..:.:||:.:|..:...||:||||.|
plant   930 LFKISEEIVIDATDSGNIARLINHSCMPNCYARIVSMGDGEDNRIVLIAKTNVAAGEELTYDYLF 994

  Fly  1621 PL---EDEKIPCLCGAQGCRGTLN 1641
            .:   |:.|:||||.|..||..:|
plant   995 EVDESEEIKVPCLCKAPNCRKFMN 1018

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set1NP_001015221.1 RRM_Set1 99..191 CDD:409745
U2AF_lg 255..>386 CDD:273727
N-SET 1352..1496 CDD:463344 27/175 (15%)
SET_SETD1 1490..1637 CDD:380946 72/174 (41%)
SDG14NP_191733.3 PWWP_AtATX3-like 188..292 CDD:438971 16/134 (12%)
PHD_TCF19_like 365..415 CDD:276992 8/51 (16%)
COG5141 <518..>765 CDD:227470 49/340 (14%)
ePHD_ATX3_4_5_like 603..714 CDD:277133 17/112 (15%)
SET_SETD1-like 862..1014 CDD:380916 69/152 (45%)
Blue background indicates that the domain is not in the aligned region.

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