DRSC/TRiP Functional Genomics Resources

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Protein Alignment Set1 and suv39h2

DIOPT Version :10

Sequence 1:NP_001015221.1 Gene:Set1 / 3354971 FlyBaseID:FBgn0040022 Length:1641 Species:Drosophila melanogaster
Sequence 2:NP_001016508.1 Gene:suv39h2 / 549262 XenbaseID:XB-GENE-852675 Length:406 Species:Xenopus tropicalis


Alignment Length:419 Identity:93/419 - (22%)
Similarity:162/419 - (38%) Gaps:125/419 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly  1326 VPC-DMYKTRDQ--NEEMVILYTFLTKGIDAEDINFIKMSYL-DH-LHKEPYAMFLNNTHWVDHC 1385
            ||| ...:|..:  .:||:|....   ||..:::|..::.|| |: :.|.....|:....|.:.|
 Frog    10 VPCLASIETLQELCRKEMLICTNI---GITRKNLNNYEVEYLCDYRIEKGVEKFFVKWKGWPESC 71

  Fly  1386 TTDRAFWPP------PSKKRRKDDELIRHKTGCA---RTEGFYKLDVR-----------EKAKHK 1430
            .|    |.|      |:..::...:|..:  .||   ..:||.|..::           :|||.:
 Frog    72 NT----WEPTRNLKCPTLLKQFYSDLYNY--FCALKPNKKGFLKNSIKSLDPSLSDYIVKKAKQR 130

  Fly  1431 YHYAKANTEDSFNEDRSDEPTALTNHHHNKLISKMQGISRE-ARSNQRRLLTAFGSMGES----- 1489
              .|....|:..|..::...|....:     ...::|...: ...|..:......::||:     
 Frog   131 --IALRRWEEELNRKKTHSGTLFVEN-----TVDLEGPPMDFYYINDYKASPGVNTLGEAIVGCD 188

  Fly  1490 ---------------ELLKFNQLKFRKKQLK---------------------------------- 1505
                           .|..:|:    .:|:|                                  
 Frog   189 CSDCFKGKCCPTEAGVLFAYNE----HRQIKIPPGRPIYECNSRCKCGPDCPNRVVQKGPPYSLC 249

  Fly  1506 -FAKSAIHDWGLFAMEPIAADEMVIEYVGQMIRPVVADLRETKYEAIGIGSSYLFRIDMET---I 1566
             |.......||:..::.|..:..|:||||::|....|:.|..:|::.||  :|||.:|.|.   .
 Frog   250 IFRTDNGRGWGVKTLQKIKKNSFVMEYVGEVITSEEAERRGQQYDSRGI--TYLFDLDYEADEFT 312

  Fly  1567 IDATKCGNLARFINHSCNPNCYAKVITIES----EKKIVIYSKQPIGINEEITYDYKF------- 1620
            :||.:.||::.|:||||:||.....:.|::    ..:|.::|.:.|...||:|:||:.       
 Frog   313 VDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDVRLPRIALFSTRNIKAGEELTFDYQMKGSGDFS 377

  Fly  1621 -------PLEDE-KIPCLCGAQGCRGTLN 1641
                   |.:.. :|.|.|||..|||.||
 Frog   378 TDSIDMSPAKKRVRIACKCGAATCRGYLN 406

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set1NP_001015221.1 RRM_Set1 99..191 CDD:409745
U2AF_lg 255..>386 CDD:273727
N-SET 1352..1496 CDD:463344 30/186 (16%)
SET_SETD1 1490..1637 CDD:380946 50/203 (25%)
suv39h2NP_001016508.1 CD_SUV39H1_like 43..91 CDD:349289 11/51 (22%)
SET_SUV39H2 163..405 CDD:380930 56/247 (23%)
Blue background indicates that the domain is not in the aligned region.

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