DRSC/TRiP Functional Genomics Resources

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Protein Alignment Set1 and set-1

DIOPT Version :10

Sequence 1:NP_001015221.1 Gene:Set1 / 3354971 FlyBaseID:FBgn0040022 Length:1641 Species:Drosophila melanogaster
Sequence 2:NP_001022796.1 Gene:set-1 / 175918 WormBaseID:WBGene00004781 Length:242 Species:Caenorhabditis elegans


Alignment Length:212 Identity:53/212 - (25%)
Similarity:88/212 - (41%) Gaps:34/212 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly  1436 ANTEDSFNEDRSDEPTALTNHHH-------NKLISKMQGISREARSNQRRLLTAFGSMGESELLK 1493
            |....|.:.:.|:.|::|.:|..       :|.....:|:|.:..||.:  :|.|..:..|....
 Worm    19 AAASPSSDIENSENPSSLASHSSSSGRMTPSKNTRSRKGVSVKDVSNHK--ITEFFQVRRSNRKT 81

  Fly  1494 FNQLKFRKKQ--------------LKFAKSAIHDWGLFAMEPIAADEMVIEYVGQMIRPVVADLR 1544
            ..|:....|.              |:..|..:...|:.........:.|:||.|.|:....|.:.
 Worm    82 SKQISDEAKHALRDTVLKGTNERLLEVYKDVVKGRGIRTKVNFEKGDFVVEYRGVMMEYSEAKVI 146

  Fly  1545 ETKY---EAIGIGSSYLFRID---METIIDATKCGN-LARFINHS-CNPNCYAKVITIESEKKIV 1601
            |.:|   |.||   ||::..:   .:..|||||... ..|.|||| ..||...||:.|:....::
 Worm   147 EEQYSNDEEIG---SYMYFFEHNNKKWCIDATKESPWKGRLINHSVLRPNLKTKVVEIDGSHHLI 208

  Fly  1602 IYSKQPIGINEEITYDY 1618
            :.:::.|...||:.|||
 Worm   209 LVARRQIAQGEELLYDY 225

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Set1NP_001015221.1 RRM_Set1 99..191 CDD:409745
U2AF_lg 255..>386 CDD:273727
N-SET 1352..1496 CDD:463344 14/66 (21%)
SET_SETD1 1490..1637 CDD:380946 39/151 (26%)
set-1NP_001022796.1 SET_SETD8 87..228 CDD:380926 38/142 (27%)
Blue background indicates that the domain is not in the aligned region.

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