DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Dbp80 and PMH1

DIOPT Version :10

Sequence 1:NP_001263168.1 Gene:Dbp80 / 3354919 FlyBaseID:FBgn0024804 Length:481 Species:Drosophila melanogaster
Sequence 2:NP_188870.1 Gene:PMH1 / 821800 AraportID:AT3G22310 Length:610 Species:Arabidopsis thaliana


Alignment Length:420 Identity:110/420 - (26%)
Similarity:183/420 - (43%) Gaps:86/420 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 LHLKASLLKGIYAMGFNTPSKIQETALPTLLADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLN 142
            |.:...::|.:...|......||:..|...:..  ::||.::::|||||.||.:.::.:: :..|
plant   121 LGISPEIVKALKGRGIEKLFPIQKAVLEPAMEG--RDMIGRARTGTGKTLAFGIPIIDKI-IKFN 182

  Fly   143 -------HPQVLCLSPTYELAIQTGEV---------------AARMGQFCREIKLRFAVRGEEVD 185
                   :||.|.|:||.|||.|..:.               ...:||..||  |.:.:      
plant   183 AKHGRGKNPQCLVLAPTRELARQVEKEFRESAPSLDTICLYGGTPIGQQMRE--LNYGI------ 239

  Fly   186 RSKKIEEHILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQCIRIHKMLNPHCQ 250
                   .:.:||||:::|. :|....::.::...||||||.|:......|..|.:.| |....|
plant   240 -------DVAVGTPGRIIDL-MKRGALNLSEVQFVVLDEADQMLQVGFAEDVEIILQK-LPAKRQ 295

  Fly   251 MLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEG--KYNAIQNIYGCIS 313
            .:.||||....:....:..:.:|..|.|:.:.:.           |..:|  .|:...:.||..|
plant   296 SMMFSATMPSWIRSLTKKYLNNPLTIDLVGDSDQ-----------KLADGITMYSIAADSYGRAS 349

  Fly   314 V-----------GQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKV 367
            :           |:.|:|..|||.|..||..: :..:....|.||::..||...|..||.|...:
plant   350 IIGPLVKEHGKGGKCIVFTQTKRDADRLAFGL-AKSYKCEALHGDISQAQRERTLAGFRDGNFSI 413

  Fly   368 LITTNILSRGIDIEQVTIVVNFDLPVDLDGMADCETYLHRIGRTGRFEPSALTRNSPIF------ 426
            |:.|::.:||:|:..|.:|::::||      .:.||::||.|||||    |..:.|.|.      
plant   414 LVATDVAARGLDVPNVDLVIHYELP------NNTETFVHRTGRTGR----AGKKGSAILIHGQDQ 468

  Fly   427 --GVKAESGKIGKEINR-SSSGAESGSREM 453
              .||....::|...|. .|...|.||..|
plant   469 TRAVKMIEKEVGSRFNELPSIAVERGSASM 498

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dbp80NP_001263168.1 DEADc_DDX19_DDX25 80..277 CDD:350721 53/218 (24%)
SF2_C_DEAD 288..414 CDD:350174 41/138 (30%)
PMH1NP_188870.1 SrmB 119..487 CDD:440279 105/407 (26%)

Return to query results.
Submit another query.