DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dbp80 and ddx19b

DIOPT Version :9

Sequence 1:NP_001263168.1 Gene:Dbp80 / 3354919 FlyBaseID:FBgn0024804 Length:481 Species:Drosophila melanogaster
Sequence 2:NP_989127.1 Gene:ddx19b / 394732 XenbaseID:XB-GENE-5902964 Length:487 Species:Xenopus tropicalis


Alignment Length:445 Identity:253/445 - (56%)
Similarity:319/445 - (71%) Gaps:27/445 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 WAKKAEDQE-VSKLVDKLNLDSK-------------------------SGEETDFDVADPAETSL 42
            ||...::|| .::...||||..:                         .|:..|.|..|.|..||
 Frog     6 WALAVDEQEAAAETFGKLNLKGEKAEKPKPESNGTEEPESAEQIPSKDGGKSEDDDKEDKAAQSL 70

  Fly    43 LIKILGKGLVNTKLSLDIQQKNPNSPLHSVKTFEALHLKASLLKGIYAMGFNTPSKIQETALPTL 107
            |.|::...||:....:::.|::|||||:|||:||.|.||..||||:||||||.||||||.|||.:
 Frog    71 LNKLIRNNLVSNTNQVEVLQRDPNSPLYSVKSFEELRLKPELLKGVYAMGFNRPSKIQENALPMM 135

  Fly   108 LADPPQNMIAQSQSGTGKTAAFVLAMLSRVNVCLNHPQVLCLSPTYELAIQTGEVAARMGQFCRE 172
            ||:|.||:||||||||||||||||||||||:....:||.||||||||||:|||:|..:|||| ..
 Frog   136 LAEPSQNLIAQSQSGTGKTAAFVLAMLSRVDPANKYPQCLCLSPTYELALQTGKVIEQMGQF-SN 199

  Fly   173 IKLRFAVRGEEVDRSKKIEEHILIGTPGKLLDWGIKFRLFDMKKISVFVLDEADVMIATQGHHDQ 237
            |||.:||||::::|.:||.|||:|||||.:|||..|.|..|.|||.||||||||||||||||.||
 Frog   200 IKLAYAVRGKKLERGQKIPEHIVIGTPGTVLDWCSKLRFIDPKKIKVFVLDEADVMIATQGHQDQ 264

  Fly   238 CIRIHKMLNPHCQMLFFSATYGKEVMDFARLIVADPTIIRLMREEESLENIKQYYVKCKNEEGKY 302
            .|||.|||...||||.||||:.:.|..||:.:|.:|.||:|.||||:|:.||||||:|.:.|.|:
 Frog   265 SIRIQKMLPRDCQMLLFSATFEESVWRFAQKVVPEPNIIKLKREEETLDTIKQYYVECHSREDKF 329

  Fly   303 NAIQNIYGCISVGQAIIFCHTKRTAAWLAAKMTSDGHSVAVLTGDLTVVQRLDVLDRFRSGLEKV 367
            .|:.||||.|::.||:|||||::||:|||.::..:||.||:|:|::.|.||..|:||||.|.|||
 Frog   330 RALCNIYGSITIAQAMIFCHTRKTASWLAGELYKEGHQVALLSGEMMVEQRAAVIDRFREGKEKV 394

  Fly   368 LITTNILSRGIDIEQVTIVVNFDLPVDLDGMADCETYLHRIGRTGRFEPSALTRN 422
            |:|||:.:||||:|||::|:|||||||.||..|.|||||||||||||....|..|
 Frog   395 LVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAIN 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dbp80NP_001263168.1 DEADc 75..277 CDD:238167 136/201 (68%)
DEXDc 88..291 CDD:214692 136/202 (67%)
Helicase_C 299..414 CDD:278689 71/114 (62%)
ddx19bNP_989127.1 DEAD-like_helicase_N 84..311 CDD:391939 150/227 (66%)
SF2_C_DEAD 315..451 CDD:350174 82/135 (61%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H56032
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D254883at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR47958
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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