Protein Alignment vtd and SYN4

DIOPT Version :10

• Sequence 1: NP_001015132.1
• Gene: vtd / 3354896
• FlyBaseID: FBgn0260987
• Length: 715
• Species: Drosophila melanogaster
• Sequence 2: NP_197131.2
• Gene: SYN4 / 831487
• AraportID: AT5G16270
• Length: 1031
• Species: Arabidopsis thaliana
• Alignment Length: 1062
• Identity: 223/1062 - (20%)
• Similarity: 359/1062 - (33%)
• Gaps: 392/1062 - (36%)

  Fly     1 MFYEHIILAKKGPLARIWLAAHWDKKITKAHVFETNIEKSVEGILQPKVKLALRTSGHLLLGVVR 65
            |||...||||||||..||:|||.::|:.|..|.:|:|..||:.||.|:..:|||.|.||||||||
plant     1 MFYSQFILAKKGPLGTIWIAAHLERKLRKNQVADTDIGVSVDSILFPEAPIALRLSSHLLLGVVR 65

  Fly    66 IYSRKAKYLLADCNEAFVKIKMAFRPGMVDLPEGHREANVNAITLPEVFHDFDTALPELNDIDIE 130
            |||||..||..||:||.:|:|.|||...||||.....|..::|||||.|...|..||: |:|...
plant    66 IYSRKVNYLFDDCSEALLKVKQAFRSAAVDLPPEESTAPYHSITLPETFDLDDFELPD-NEIFQG 129

  Fly   131 AQFSINQSRADEITMRED-----YGSLSLSLQDDGFGDIGFEAETPEIIRCSIPSNINDKIF-DN 189
            .....:.|..::||:::.     |.:....| |:.|||    .:|.:     ...::::.:| |.
plant   130 NYVDHHVSTKEQITLQDTMDGVVYSTSQFGL-DERFGD----GDTSQ-----AALDLDEAVFQDK 184

  Fly   190 DVL----ENIESLDPHS-LDAHADMPGSRLDGDGFGDS----FGQ-------------------- 225
            ||:    |.:..:|.:: |||.|  ||.:...:|..::    |.:
plant   185 DVIGSDDEGVPGIDHNAYLDAAA--PGIKDSMEGVSEAMPMDFNEEQVEDLAMNNEFIEDAQAPQ 247

  Fly   226 -PALFE--------DDLFGDPSQPVEQITKE----STTVLNA----------------------- 254
             |.|.|        :.:..|....||.:..|    |:..|||
plant   248 TPGLVEVPNSSSVREQMACDDHMDVEDLNAEEGIKSSGELNANEMPKRGEDLSSEYNAPESAVTP 312

  Fly   255 ---------------DDSDEDAIDNIHNVPSPATS------------------------------ 274
                           ::.:|:..:::| |.||..|
plant   313 VEVDKSQIDENVNTQNEPEEERAEHVH-VTSPCCSHITTEMEDPGQVMNEAGANVVPDKPDAVPP 376

  Fly   275 ---------------------------------------LVNSIEDEKEENNLNGHASVSENVPM 300
                                                   |.|:.|.:::..||.|... |:..|.
plant   377 LETPGEENRDHFAIATEVNQETDSSLQGDEQAYSRPDGQLNNAHETDEQLGNLTGFTD-SDFPPP 440

  Fly   301 NEITLVQN----------------EDEG-----------------FALAPLDVSMYK-----GVT 327
            .::..|.|                ||.|                 |..:.|......     |:.
plant   441 EKVLAVPNRQGDGNDFMVESTPDKEDPGTCNDDAGNNNITGKKRTFTESTLTAESLNSVESVGLI 505

  Fly   328 KAKR------------------------------------------------KRKLIIDEIKNIS 344
            ::||                                                |||:::|:...:.
plant   506 QSKRTADSVPDDDDLLSSILVGKSSFLKMRPTPVLEPATTKRLRSAPRSTATKRKVLMDDPMVLH 570

  Fly   345 GEEMKAQLADTSDILTTLDLAPPTKRLMYWKETGGVEK-LFSLPSRSIPARALFGNYNRQLFSHS 408
            |:.::.||.:|.||......||.|...:...:...:|. ||..|        :|...:.:|.|..
plant   571 GDIIRQQLTNTEDIRRVRKKAPCTVPEIVMLQRQALEDGLFKEP--------IFTGMSVELVSLH 627

  Fly   409 TFFEDFSSVVPME-------ILALEFYTKENENALIIFNKKGRKRK-------NDNMSNLFLDHV 459
            |...|...::.:|       :.|:|    :||.::....:...:..       ||........|.
plant   628 TEPYDLRGIMIIENDDRHASVGAVE----DNECSVTAVEENKTEESSDPQAHPNDCEEQPGTAHT 688

  Fly   460 PDSVVQSLEAPEVLRANHKSLGVSTVSVEIVSKEQESISCQNELTFFDNMRSPDLLSLNEMEQFS 524
            .....|::...|.|:.:::....|.:.   |.||....:.:..|...|     |:..:...|:..
plant   689 HPQEEQTINQQEELKDDNELAEKSDLE---VLKEGNGAADEVNLVVID-----DVSQIPSEEKLD 745

  Fly   525 SINELPLTPRNMNH--EMGDD--------------------------FNQ-----GDSTPAGLDH 556
            .:.:|.:...:.||  |.|.|                          ||:     .|..|...:.
plant   746 RVEDLQVEESHENHDGEGGQDVCADPNEKSCTDVIEIAEGDTDINPIFNEMDLKVEDELPHEDEK 810

  Fly   557 GHATPQHGNIGEMDH---DSVIPTKKTAVILNESVGTSVL----------SDNGVSKRT------ 602
            ..|:.:...:|..|.   |:.:.:.:|..:....:....|          :.:|::..|
plant   811 TDASAEVSELGRDDQTPCDNTVGSTETGCLEAGDLSNMALENCNEPLVEANSDGLNPETESYNKY 875

  Fly   603 -------------NNILKGWDNYEIPSFVGQNHGDEQMEN------------ETDEQFEE----- 637
                         .|.|.| ::......:|.|...:.|||            |.||..||
plant   876 EPHNEMSNEEASMQNALDG-EHTSRDGLMGDNDEMDTMENAHDTGFLNVDDDEVDEDHEEDDIQY 939

  Fly   638 ----------------RVLNKRAAHLFIDVRAHFIAKDSLELSQLTSGNSRKQAAQKFYSLLVLK 686
                            |.:.|....||.....:  .|:.|...:|.:|.:||:|::.|:..||||
plant   940 DDETRLLENSGWSSRTRAVAKYLQTLFDKETEN--GKNVLVADKLLAGKTRKEASRMFFETLVLK 1002

  Fly   687 KFKVLHIDQSAPYADITITRGP 708
            ....:.::|..||..|.|...|
plant  1003 TRDYIQVEQGKPYESIIIKPRP 1024

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
vtd	NP_001015132.1	Rad21_Rec8_N	1..103	CDD:461446	58/101 (57%)
		Rad21_Rec8_M_NXP1-like	327..404	CDD:439294	20/125 (16%)
		Rad21_Rec8	657..710	CDD:335912	18/52 (35%)
SYN4	NP_197131.2	Rad21_Rec8_N	1..104	CDD:461446	58/102 (57%)
		Rad21_Rec8_M_AtSYN1-like	555..631	CDD:439295	21/83 (25%)
		2A1904	<647..885	CDD:273344	36/249 (14%)
		Rad21_Rec8	972..1026	CDD:335912	18/55 (33%)